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The map label for this gene is ynfI [C]

Identifier: 167622343

GI number: 167622343

Start: 472030

End: 472743

Strand: Reverse

Name: ynfI [C]

Synonym: Shal_0403

Alternate gene names: 167622343

Gene position: 472743-472030 (Counterclockwise)

Preceding gene: 167622344

Following gene: 167622342

Centisome position: 9.04

GC content: 43.28

Gene sequence:

>714_bases
ATGTTGGCACTGCATTCATTGAACGAAGAAAGTAATTGTGGAAAACACACCATGAGCAGTGAACAACTCATTAATCATAA
AGATGAAATACAAGCTATCGATGATGACTTGATACTAGCGAGCCTTAACTTACTGTATCGATTTTTTTACTTTGAGCCGG
AAGATTCTCTATTACTCAAGGTTGAGGAGAGTCATATCTTGCACTTCTGGCAGGCAGAGATGGGGATATCGACACTGGAG
ACTGAAATATTTCTGTCACAAGCATCGGCTTTAGAGCAGTTGCAGTCTGATCACCTTAGCCTGTTTGTGGGGATAGGCAT
GCCTAAAGCCATGCCTTGGGGATCGGTTTATCTCAGTGAGGATAACCTACTACTGCAAAAATCCACCTATGCACTAGCCG
GATTTCTTGAAGATAAGCATTTAAGGTTTCAACTCGATGAAAAGCAACCTCTCGATCATATCGGCCTATGCCTATCTGCT
TTGGCCAGCTTACTTGAGCGTCATATCAGAGCTAAAGATGCTAGCAGCGAAAGGTGTGTGTGTGAGTTTTTATGCGTGCA
CATACTCCCTTGGAGCTTCCGCTTTACTGAGCTACTTACGAAAAATGCCGAAACAGCGCTATACCGACTTTTAGGTAAAA
TAACGCTACACACCCTCACTCAGCTGCAAGCGAAATGGCAGTTAACCCCAGTCCAAAGACAGCTGTATTATTAA

Upstream 100 bases:

>100_bases
ACCAACTTGCGACCGACTGCACTGGCAAAGGCTAACCCCCAAGGCACCAACCTAGTTGAAGTCTGCGGTATCTAGAGTAA
TAAATTGCAGTGTCACGAAT

Downstream 100 bases:

>100_bases
CTCGAATAAGTTAGCAAATGATCCGTAGCTTTATAATAGACCCGATTATTTATAGCGAGTTAGCTAAGTTAACCGTGGCA
CTCAACCAAAGCGGATCCTG

Product: cytoplasmic chaperone TorD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MLALHSLNEESNCGKHTMSSEQLINHKDEIQAIDDDLILASLNLLYRFFYFEPEDSLLLKVEESHILHFWQAEMGISTLE
TEIFLSQASALEQLQSDHLSLFVGIGMPKAMPWGSVYLSEDNLLLQKSTYALAGFLEDKHLRFQLDEKQPLDHIGLCLSA
LASLLERHIRAKDASSERCVCEFLCVHILPWSFRFTELLTKNAETALYRLLGKITLHTLTQLQAKWQLTPVQRQLYY

Sequences:

>Translated_237_residues
MLALHSLNEESNCGKHTMSSEQLINHKDEIQAIDDDLILASLNLLYRFFYFEPEDSLLLKVEESHILHFWQAEMGISTLE
TEIFLSQASALEQLQSDHLSLFVGIGMPKAMPWGSVYLSEDNLLLQKSTYALAGFLEDKHLRFQLDEKQPLDHIGLCLSA
LASLLERHIRAKDASSERCVCEFLCVHILPWSFRFTELLTKNAETALYRLLGKITLHTLTQLQAKWQLTPVQRQLYY
>Mature_237_residues
MLALHSLNEESNCGKHTMSSEQLINHKDEIQAIDDDLILASLNLLYRFFYFEPEDSLLLKVEESHILHFWQAEMGISTLE
TEIFLSQASALEQLQSDHLSLFVGIGMPKAMPWGSVYLSEDNLLLQKSTYALAGFLEDKHLRFQLDEKQPLDHIGLCLSA
LASLLERHIRAKDASSERCVCEFLCVHILPWSFRFTELLTKNAETALYRLLGKITLHTLTQLQAKWQLTPVQRQLYY

Specific function: Unknown

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family. DmsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081942, Length=125, Percent_Identity=35.2, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020945 [H]

Pfam domain/function: PF02613 Nitrate_red_del [H]

EC number: NA

Molecular weight: Translated: 27266; Mature: 27266

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLALHSLNEESNCGKHTMSSEQLINHKDEIQAIDDDLILASLNLLYRFFYFEPEDSLLLK
CCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHEECCCCCEEEE
VEESHILHFWQAEMGISTLETEIFLSQASALEQLQSDHLSLFVGIGMPKAMPWGSVYLSE
ECCCHHEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEECC
DNLLLQKSTYALAGFLEDKHLRFQLDEKQPLDHIGLCLSALASLLERHIRAKDASSERCV
CCEEEEECHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
CEFLCVHILPWSFRFTELLTKNAETALYRLLGKITLHTLTQLQAKWQLTPVQRQLYY
HHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCC
>Mature Secondary Structure
MLALHSLNEESNCGKHTMSSEQLINHKDEIQAIDDDLILASLNLLYRFFYFEPEDSLLLK
CCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHEECCCCCEEEE
VEESHILHFWQAEMGISTLETEIFLSQASALEQLQSDHLSLFVGIGMPKAMPWGSVYLSE
ECCCHHEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEECC
DNLLLQKSTYALAGFLEDKHLRFQLDEKQPLDHIGLCLSALASLLERHIRAKDASSERCV
CCEEEEECHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
CEFLCVHILPWSFRFTELLTKNAETALYRLLGKITLHTLTQLQAKWQLTPVQRQLYY
HHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]