| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622337
Identifier: 167622337
GI number: 167622337
Start: 465034
End: 465732
Strand: Reverse
Name: 167622337
Synonym: Shal_0397
Alternate gene names: NA
Gene position: 465732-465034 (Counterclockwise)
Preceding gene: 167622341
Following gene: 167622332
Centisome position: 8.91
GC content: 45.06
Gene sequence:
>699_bases ATGTGTGGTCGACTCAATATTATTGATGACATGTTTGTACAAACATTGATGGATGATTTGCGGATTAGCAATCAGCAAGA GATGCTGTTTGGTCGCTTTAAAATGCCGACCAATGACATCAGTATTGTGCGTGAGATTGATGGTGAGCGCCGCTTGCAAA CCGCCACCTGGTGGTTACTGCTTGAAACTTGCTATGAAGGCTTTAAACCCAGCCGTTACACCTCATTTAACACTCGATTC GATAAGTTAAATACCCCCAATAGCGCAGGTTTTCAGCCATTTAGAGAGAGTCGTTGTTTAGTGATTGCCAGTGGCTTTGG TGAAACTGAGAAAAGAGGTAAAGATACTTATTATCACGACTTTATTGCCGAGAACTCAGCGATAGCTTTTGGCGGGTTAT TTAGAGACTGGCAGCACCCCAAAACCGGCGAAGTGACCACATCCTGTTCCATCATCACCAATCCGCCACACCCAGACCTA CTTCCGTATCACAGCAAAGCCAGCCCGATGATCTTGCCGCAAAATGATGAAGTGATCGATGCGTGGTTAAACCCCGCTAA CCAACAAGTTGAGATGTTTGATGACTTACTCAAGCCTGCTCTTAGGCATGACTTTATGGTGCAGCAAATAAATAAGCCGA GTCAGCATCAACCCATTGGTCAAGCTACCCGGCTTATTCCTAACGATTACCTTGTGTAA
Upstream 100 bases:
>100_bases GTGACACAAGAATTAACAATGGGTCCCTATTTTTATCTAGCTATACTCAGCTCAAAATCATTCATATACTCAATACAAGT TCTGTTTACGGTGATGCGCT
Downstream 100 bases:
>100_bases GCTGTAACTAAACACTGAATTGAGATAAGCGTTCGGTATCAGATAACAGCATGCCTAACTCACCTCAGCAACAAAACAGT TAAGTGATTACACCGTTAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 232; Mature: 232
Protein sequence:
>232_residues MCGRLNIIDDMFVQTLMDDLRISNQQEMLFGRFKMPTNDISIVREIDGERRLQTATWWLLLETCYEGFKPSRYTSFNTRF DKLNTPNSAGFQPFRESRCLVIASGFGETEKRGKDTYYHDFIAENSAIAFGGLFRDWQHPKTGEVTTSCSIITNPPHPDL LPYHSKASPMILPQNDEVIDAWLNPANQQVEMFDDLLKPALRHDFMVQQINKPSQHQPIGQATRLIPNDYLV
Sequences:
>Translated_232_residues MCGRLNIIDDMFVQTLMDDLRISNQQEMLFGRFKMPTNDISIVREIDGERRLQTATWWLLLETCYEGFKPSRYTSFNTRF DKLNTPNSAGFQPFRESRCLVIASGFGETEKRGKDTYYHDFIAENSAIAFGGLFRDWQHPKTGEVTTSCSIITNPPHPDL LPYHSKASPMILPQNDEVIDAWLNPANQQVEMFDDLLKPALRHDFMVQQINKPSQHQPIGQATRLIPNDYLV >Mature_232_residues MCGRLNIIDDMFVQTLMDDLRISNQQEMLFGRFKMPTNDISIVREIDGERRLQTATWWLLLETCYEGFKPSRYTSFNTRF DKLNTPNSAGFQPFRESRCLVIASGFGETEKRGKDTYYHDFIAENSAIAFGGLFRDWQHPKTGEVTTSCSIITNPPHPDL LPYHSKASPMILPQNDEVIDAWLNPANQQVEMFDDLLKPALRHDFMVQQINKPSQHQPIGQATRLIPNDYLV
Specific function: Unknown
COG id: COG2135
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26747; Mature: 26747
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCGRLNIIDDMFVQTLMDDLRISNQQEMLFGRFKMPTNDISIVREIDGERRLQTATWWLL CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHH LETCYEGFKPSRYTSFNTRFDKLNTPNSAGFQPFRESRCLVIASGFGETEKRGKDTYYHD HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHCCCCCHHHH FIAENSAIAFGGLFRDWQHPKTGEVTTSCSIITNPPHPDLLPYHSKASPMILPQNDEVID HHHCCCCEEECHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCHHH AWLNPANQQVEMFDDLLKPALRHDFMVQQINKPSQHQPIGQATRLIPNDYLV HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCC >Mature Secondary Structure MCGRLNIIDDMFVQTLMDDLRISNQQEMLFGRFKMPTNDISIVREIDGERRLQTATWWLL CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHH LETCYEGFKPSRYTSFNTRFDKLNTPNSAGFQPFRESRCLVIASGFGETEKRGKDTYYHD HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHCCCCCHHHH FIAENSAIAFGGLFRDWQHPKTGEVTTSCSIITNPPHPDLLPYHSKASPMILPQNDEVID HHHCCCCEEECHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCHHH AWLNPANQQVEMFDDLLKPALRHDFMVQQINKPSQHQPIGQATRLIPNDYLV HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA