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The map label for this gene is fdhB1 [H]

Identifier: 167622055

GI number: 167622055

Start: 130509

End: 131078

Strand: Direct

Name: fdhB1 [H]

Synonym: Shal_0114

Alternate gene names: 167622055

Gene position: 130509-131078 (Clockwise)

Preceding gene: 167622054

Following gene: 167622056

Centisome position: 2.5

GC content: 48.07

Gene sequence:

>570_bases
ATGGCTACAATGAAATTTTTATGTGATACCAAGCGCTGCATCGAGTGTAACGGTTGTGTCACAGCATGTAAGAACGAAAA
CGACTCTGCTCTAGAGTGGGGAATTCAACGTCGTCGCGTAGTGACTATCAATGATGGTGAGAAAGGCGAAGCGTCTATCT
CAGTAGCATGTATGCACTGTAGCGATGCACCTTGTATGGCTGTTTGCCCAGCAAACTGTTTCTACAAGACAGAAGATGGC
ATCGTATTGCACGACAAAGATACTTGTATCGGTTGTGGTTACTGCCTATACGCTTGCCCATTCGGCGCGCCTCAGTTCCC
TAAACAGGGTGCGTTTGGTGCTCGTGGCGTTATGGACAAGTGTACTTTCTGTGCCGGCGGCCCAGAAGAGAACTTCTCTG
ATGCAGAGCGTCAGAAGTACGGTGCAAACCGTATTGCTGAAGGTAAGCTACCTATGTGTGCTGAGTTGTGTGCAACTAAA
TCACTACTAGCGGGTGACGCAGAAGTTGTTTCTGCCATCTTCCGTGAGCGTGTTGCATACCGTGGTTCTAACAAAAATGT
TTGGGGCTAA

Upstream 100 bases:

>100_bases
CTTATGGTTATGACCCTGTGACTCAGATGCAGGAAACTAAAGCATCACTTTGTCAGATTGCTAAAGCATAATTGCAGTAT
TCGCTAGGAGAATTGCCAGA

Downstream 100 bases:

>100_bases
ACCTTAAATATTAAGTTAGTCCATAATCGCTGCAAGCTGTCTATTTTAGGTGGCTTGCAGCAATCAGGAGTTGATATGAA
CAAATGGTTCAAACACATAG

Product: 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein

Products: CO2; NADH

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MATMKFLCDTKRCIECNGCVTACKNENDSALEWGIQRRRVVTINDGEKGEASISVACMHCSDAPCMAVCPANCFYKTEDG
IVLHDKDTCIGCGYCLYACPFGAPQFPKQGAFGARGVMDKCTFCAGGPEENFSDAERQKYGANRIAEGKLPMCAELCATK
SLLAGDAEVVSAIFRERVAYRGSNKNVWG

Sequences:

>Translated_189_residues
MATMKFLCDTKRCIECNGCVTACKNENDSALEWGIQRRRVVTINDGEKGEASISVACMHCSDAPCMAVCPANCFYKTEDG
IVLHDKDTCIGCGYCLYACPFGAPQFPKQGAFGARGVMDKCTFCAGGPEENFSDAERQKYGANRIAEGKLPMCAELCATK
SLLAGDAEVVSAIFRERVAYRGSNKNVWG
>Mature_188_residues
ATMKFLCDTKRCIECNGCVTACKNENDSALEWGIQRRRVVTINDGEKGEASISVACMHCSDAPCMAVCPANCFYKTEDGI
VLHDKDTCIGCGYCLYACPFGAPQFPKQGAFGARGVMDKCTFCAGGPEENFSDAERQKYGANRIAEGKLPMCAELCATKS
LLAGDAEVVSAIFRERVAYRGSNKNVWG

Specific function: This chain is an electron transfer unit containing 18 cysteine residues, 16 of which occur in four clusters [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787872, Length=174, Percent_Identity=35.0574712643678, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787122, Length=171, Percent_Identity=35.0877192982456, Blast_Score=98, Evalue=3e-22,
Organism=Escherichia coli, GI1789370, Length=202, Percent_Identity=30.1980198019802, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI226510944, Length=179, Percent_Identity=31.8435754189944, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1790326, Length=193, Percent_Identity=31.0880829015544, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI2367345, Length=184, Percent_Identity=29.8913043478261, Blast_Score=74, Evalue=4e-15,
Organism=Escherichia coli, GI1787749, Length=197, Percent_Identity=27.9187817258883, Blast_Score=71, Evalue=4e-14,
Organism=Escherichia coli, GI87082180, Length=102, Percent_Identity=38.2352941176471, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1788811, Length=126, Percent_Identity=30.952380952381, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI87082114, Length=91, Percent_Identity=35.1648351648352, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789079, Length=100, Percent_Identity=37, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI2367245, Length=171, Percent_Identity=31.5789473684211, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR000813 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: 1.2.1.2

Molecular weight: Translated: 20448; Mature: 20316

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
12.7 %Cys+Met (Translated Protein)
9.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
12.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATMKFLCDTKRCIECNGCVTACKNENDSALEWGIQRRRVVTINDGEKGEASISVACMHC
CCCHHHHHCCCCEEECCCCEEECCCCCCHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEC
SDAPCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGAPQFPKQGAFGARGVMDK
CCCCEEEECCCCCEEECCCCEEEECCCCEEECCHHHHHCCCCCCCCCCCCCCCCCCHHHH
CTFCAGGPEENFSDAERQKYGANRIAEGKLPMCAELCATKSLLAGDAEVVSAIFRERVAY
HEECCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
RGSNKNVWG
CCCCCCCCC
>Mature Secondary Structure 
ATMKFLCDTKRCIECNGCVTACKNENDSALEWGIQRRRVVTINDGEKGEASISVACMHC
CCHHHHHCCCCEEECCCCEEECCCCCCHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEC
SDAPCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGAPQFPKQGAFGARGVMDK
CCCCEEEECCCCCEEECCCCEEEECCCCEEECCHHHHHCCCCCCCCCCCCCCCCCCHHHH
CTFCAGGPEENFSDAERQKYGANRIAEGKLPMCAELCATKSLLAGDAEVVSAIFRERVAY
HEECCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
RGSNKNVWG
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate; NAD+

Specific reaction: formate + NAD+ = CO2 + NADH

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1781728; 14500908 [H]