Click here to switch to the map view.

The map label for this gene is rlmH1 [H]

Identifier: 167040951

GI number: 167040951

Start: 2380392

End: 2380859

Strand: Reverse

Name: rlmH1 [H]

Synonym: Teth514_2340

Alternate gene names: 167040951

Gene position: 2380859-2380392 (Counterclockwise)

Preceding gene: 167040952

Following gene: 167040949

Centisome position: 96.89

GC content: 28.85

Gene sequence:

>468_bases
ATGAAAATACATATAATAGCTGTTGGAAAAATAAAGGAGAACTATATAAATAATGGGATAAATTTTTATTTAAAAAAATT
GCGACCTTATTGTGAAATAGAAATTAGAGAAGTAGAGGAAGAAAAAGCTCCTCAAAATTTAAGTGAAAAAGAAAAAGAGG
AGATTTTGCGTAAAGAAGGAGAGAGAATTCTTTCTAAAATAAAAAAAGGAAGCTTTGTTGTTTCTCTTGCTATAGAAGGA
AAAGAAATAGACTCATATAAATTTTCCCAATTTATAAAGGCTACTTTTCAATCTGGTTATAGAGAAATGACCTTTGTAAT
AGGTGGCTCGTTGGGATTGTGGGAAAATATAAAGAAACAATCTCACTTAAATCTTTCTTTTTCTAAAATGACATTTCCTC
ATCAATTGATGCGGCTCATACTTTTAGAACAGCTTTATTTAGCATTTGATGGTAAAAATCACTTGTGA

Upstream 100 bases:

>100_bases
TAGATGAAGTTTCTTTTACTGATTGGCTAGTACCTCATAAATGTGATTTTTGTGATGATGTGCCTAAATATCTTGTAGTT
TAAAAATGAGGGACTTAATA

Downstream 100 bases:

>100_bases
TAAGGTTCATTGTTTAAAATTTTATAAGCGCGATACAACTGTTCAAAAAGAATAGTAGATGCAAGGCCTAAACTCATTTC
CATAGGACTTATGCTAATGC

Product: rRNA large subunit methyltransferase

Products: NA

Alternate protein names: 23S rRNA m3Psi1915 methyltransferase 1; rRNA (pseudouridine-N3-)-methyltransferase rlmH 1 [H]

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MKIHIIAVGKIKENYINNGINFYLKKLRPYCEIEIREVEEEKAPQNLSEKEKEEILRKEGERILSKIKKGSFVVSLAIEG
KEIDSYKFSQFIKATFQSGYREMTFVIGGSLGLWENIKKQSHLNLSFSKMTFPHQLMRLILLEQLYLAFDGKNHL

Sequences:

>Translated_155_residues
MKIHIIAVGKIKENYINNGINFYLKKLRPYCEIEIREVEEEKAPQNLSEKEKEEILRKEGERILSKIKKGSFVVSLAIEG
KEIDSYKFSQFIKATFQSGYREMTFVIGGSLGLWENIKKQSHLNLSFSKMTFPHQLMRLILLEQLYLAFDGKNHL
>Mature_155_residues
MKIHIIAVGKIKENYINNGINFYLKKLRPYCEIEIREVEEEKAPQNLSEKEKEEILRKEGERILSKIKKGSFVVSLAIEG
KEIDSYKFSQFIKATFQSGYREMTFVIGGSLGLWENIKKQSHLNLSFSKMTFPHQLMRLILLEQLYLAFDGKNHL

Specific function: Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA [H]

COG id: COG1576

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase rlmH family [H]

Homologues:

Organism=Escherichia coli, GI1786855, Length=155, Percent_Identity=30.9677419354839, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003742 [H]

Pfam domain/function: PF02590 SPOUT_MTase [H]

EC number: NA

Molecular weight: Translated: 18114; Mature: 18114

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIHIIAVGKIKENYINNGINFYLKKLRPYCEIEIREVEEEKAPQNLSEKEKEEILRKEG
CEEEEEEECCHHHHHHHCCHHHHHHHCCCCCEEHHHHHHHHCCCCCCCHHHHHHHHHHHH
ERILSKIKKGSFVVSLAIEGKEIDSYKFSQFIKATFQSGYREMTFVIGGSLGLWENIKKQ
HHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHEEEEEECCCCHHHHHHHHH
SHLNLSFSKMTFPHQLMRLILLEQLYLAFDGKNHL
HCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKIHIIAVGKIKENYINNGINFYLKKLRPYCEIEIREVEEEKAPQNLSEKEKEEILRKEG
CEEEEEEECCHHHHHHHCCHHHHHHHCCCCCEEHHHHHHHHCCCCCCCHHHHHHHHHHHH
ERILSKIKKGSFVVSLAIEGKEIDSYKFSQFIKATFQSGYREMTFVIGGSLGLWENIKKQ
HHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHEEEEEECCCCHHHHHHHHH
SHLNLSFSKMTFPHQLMRLILLEQLYLAFDGKNHL
HCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA