Click here to switch to the map view.

The map label for this gene is 167040936

Identifier: 167040936

GI number: 167040936

Start: 2366339

End: 2367220

Strand: Reverse

Name: 167040936

Synonym: Teth514_2325

Alternate gene names: NA

Gene position: 2367220-2366339 (Counterclockwise)

Preceding gene: 167040937

Following gene: 167040935

Centisome position: 96.34

GC content: 30.27

Gene sequence:

>882_bases
ATGTCAGTGAATAATAATGAAATTTTATATATTTATGACGCAAAACTTACCAATCCTAATGGGGATCCTGATGAGGAAAA
TAGACCTAGAATGGATTATGAAAGAGAAATTAATTTAGTTTCCGATTTAAGACTTAAAAGATATATAAGAGATTATTTGA
TGTTAAAAGGATATGACATATTTGTACGATTAGTGGATGACAAGCCCGTTACAGCAGATAAAAGAGTAAAAGACCTGGAA
GATTCATCAAATGAATGGATTTTGGAAAATTGGATTGATGTGAGAATGTTTGGTGCAACTATGACAGTGCAAAAAGACAC
TAAGACTTTTATAGGACCTATCCAGTTTAATTGGGGCTATTCACTAAATAAAGTTGAGCTTTTAGAAGCAAGTATAACTT
CCCATTTTTCATCTAGTGAAACATTTGCCCAAGGTACAATAGGAAAAGACTTTAGAGTTAAATACTCATTAATAGCTTTT
TCAGGGGTTGTAAGTGGTCATAGAGCAGAAAAAACAAAACTTAAAGAAGATGACCTTTATCTACTAGATGAAGCTTTAAA
ACATGCGATACCAAACTTAGTAACAAGAAGTAAAATAGGTCAGTACCCAAGGATTTATATGAGAGTGGAATATGTTGATA
AGGTGACAATCTTAGGTGATTTTAGGGATTATATTGAGTTAAAAACAACTACAGATAGTATAAGAGATATTAATGAATGC
TCGTTAGAAATGGTCAAATTAGTTAATTTACTTAATGAGAATAAAAATAAAATAAAAAATGTTTATTATTTTGTTGATGA
AAGGTTAGAATTAAACATTAATGGCGAGAAAGTTACTTTTGAGGAGGCATTTAAAGAGTTACCACTAAAAAAGGTAGATT
AG

Upstream 100 bases:

>100_bases
TGGAAGCTTAATAAGGATGAAAGCCTATTTTATGTACTTTCAGGATATTCTTATGCGACTGCAATACCTATTTTAAAAGA
AAAGAAGGAGGTTGGTTCAA

Downstream 100 bases:

>100_bases
GATGGTGACTTCCAATGGTCATATTCGATTTATGGGGTAAATTTGCTCATTTCAGGAAATTTTATACAAATTCATCTTCT
TTAACTTATTCTGTTCCACC

Product: CRISPR-associated Csh2 family protein

Products: NA

Alternate protein names: CRISPR-Associated Csh2 Family Protein; CRISPR-Associated Protein Csd2 Family; CRISPR-Associated Csd2 Family Protein; CRISPR-Associated Protein; Csd2 Family CRISPR-Associated Protein; Crispr-Associated Protein Csh2 Family; Crispr-Protein; Csh2 Family CRISPR-Associated Protein; CRISPR-Associated RAMP Csd3 Family Protein; CRISPR-Associated RAMP Protein Cmr1 Family; Cas2 Family CRISPR-Associated Protein; Csh Crispr-Associated Protein Csh2 Family; CRISPR-Associated Protein Csd3 Family

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MSVNNNEILYIYDAKLTNPNGDPDEENRPRMDYEREINLVSDLRLKRYIRDYLMLKGYDIFVRLVDDKPVTADKRVKDLE
DSSNEWILENWIDVRMFGATMTVQKDTKTFIGPIQFNWGYSLNKVELLEASITSHFSSSETFAQGTIGKDFRVKYSLIAF
SGVVSGHRAEKTKLKEDDLYLLDEALKHAIPNLVTRSKIGQYPRIYMRVEYVDKVTILGDFRDYIELKTTTDSIRDINEC
SLEMVKLVNLLNENKNKIKNVYYFVDERLELNINGEKVTFEEAFKELPLKKVD

Sequences:

>Translated_293_residues
MSVNNNEILYIYDAKLTNPNGDPDEENRPRMDYEREINLVSDLRLKRYIRDYLMLKGYDIFVRLVDDKPVTADKRVKDLE
DSSNEWILENWIDVRMFGATMTVQKDTKTFIGPIQFNWGYSLNKVELLEASITSHFSSSETFAQGTIGKDFRVKYSLIAF
SGVVSGHRAEKTKLKEDDLYLLDEALKHAIPNLVTRSKIGQYPRIYMRVEYVDKVTILGDFRDYIELKTTTDSIRDINEC
SLEMVKLVNLLNENKNKIKNVYYFVDERLELNINGEKVTFEEAFKELPLKKVD
>Mature_292_residues
SVNNNEILYIYDAKLTNPNGDPDEENRPRMDYEREINLVSDLRLKRYIRDYLMLKGYDIFVRLVDDKPVTADKRVKDLED
SSNEWILENWIDVRMFGATMTVQKDTKTFIGPIQFNWGYSLNKVELLEASITSHFSSSETFAQGTIGKDFRVKYSLIAFS
GVVSGHRAEKTKLKEDDLYLLDEALKHAIPNLVTRSKIGQYPRIYMRVEYVDKVTILGDFRDYIELKTTTDSIRDINECS
LEMVKLVNLLNENKNKIKNVYYFVDERLELNINGEKVTFEEAFKELPLKKVD

Specific function: Unknown

COG id: COG3649

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34246; Mature: 34115

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVNNNEILYIYDAKLTNPNGDPDEENRPRMDYEREINLVSDLRLKRYIRDYLMLKGYDI
CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCEE
FVRLVDDKPVTADKRVKDLEDSSNEWILENWIDVRMFGATMTVQKDTKTFIGPIQFNWGY
EEEEECCCCCCHHHHHHHCCCCCCCEEECCCEEEEEECEEEEEECCCCEEECCEEEECCC
SLNKVELLEASITSHFSSSETFAQGTIGKDFRVKYSLIAFSGVVSGHRAEKTKLKEDDLY
CCCHHHHHHHHHHHCCCCCCCHHCCCCCCCEEEEEEEEEEHHHHCCCCCHHCCCCCCCHH
LLDEALKHAIPNLVTRSKIGQYPRIYMRVEYVDKVTILGDFRDYIELKTTTDSIRDINEC
HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCHHHEEEEECHHHHHHHHHH
SLEMVKLVNLLNENKNKIKNVYYFVDERLELNINGEKVTFEEAFKELPLKKVD
HHHHHHHHHHHCCCHHHHEEEEEEEECEEEEEECCCEEEHHHHHHHCCCCCCC
>Mature Secondary Structure 
SVNNNEILYIYDAKLTNPNGDPDEENRPRMDYEREINLVSDLRLKRYIRDYLMLKGYDI
CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCEE
FVRLVDDKPVTADKRVKDLEDSSNEWILENWIDVRMFGATMTVQKDTKTFIGPIQFNWGY
EEEEECCCCCCHHHHHHHCCCCCCCEEECCCEEEEEECEEEEEECCCCEEECCEEEECCC
SLNKVELLEASITSHFSSSETFAQGTIGKDFRVKYSLIAFSGVVSGHRAEKTKLKEDDLY
CCCHHHHHHHHHHHCCCCCCCHHCCCCCCCEEEEEEEEEEHHHHCCCCCHHCCCCCCCHH
LLDEALKHAIPNLVTRSKIGQYPRIYMRVEYVDKVTILGDFRDYIELKTTTDSIRDINEC
HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCHHHEEEEECHHHHHHHHHH
SLEMVKLVNLLNENKNKIKNVYYFVDERLELNINGEKVTFEEAFKELPLKKVD
HHHHHHHHHHHCCCHHHHEEEEEEEECEEEEEECCCEEEHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA