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The map label for this gene is ygcB [C]

Identifier: 167040934

GI number: 167040934

Start: 2363263

End: 2365599

Strand: Reverse

Name: ygcB [C]

Synonym: Teth514_2323

Alternate gene names: 167040934

Gene position: 2365599-2363263 (Counterclockwise)

Preceding gene: 167040935

Following gene: 167040931

Centisome position: 96.27

GC content: 26.62

Gene sequence:

>2337_bases
ATGAAATACTATTCTCACTATGATGAAGAGATGAAATATGAGAAACTGTTATATGAGCACTTGATAGAAGTAAAAAATCT
ATCAATTAATCAAATACCTGAAGAATATAAAAAAGCATATGAGATTATAGCATTATGCCATGATTTTGGGAAATATACAT
CTTATTTTCAAGAATATTTAAAAACTAAAAAGAAAACTTCCTTGTCAAATCACAGCTTTATTTCTGCAGTATTTGGGGGA
TATGTTGCAATTCAATATTATGGGGAAGAGAACATTCTTCCCCTTATCGTTTATAATACCATACTTCATCACCATGGAAA
TTTAGAAAGTTTTTCAGTCAATCTTCCAAGTAAATTTAAAGATGTTTCAAGAAAAGATTTCCCTTTAAATGTATCAGAAA
AAATAGATATTTCTTATAAACAACTAAAAGACATGAGACAAAATTTATCTTTCATAATACCTGATTTTGAGAGACTAGGT
TTAGCAAAAGAATTCAAACAGTTTGTTGAGGAAGAAAATGTTATAAAAGATACGTTAGCTATTCTTAAAAAATTGGAAGC
CTTATCCATTAGGAGGCTAAAATCAGATGAAAATTATTTTATACATCAAATGCTTTATTCCGCATTAATTTCAGCTGATA
AAATAAGTGCATCGAATACATATTTACCAGAAGAGTTATATGTAGATTACAAAACGTTGAATAAAATTAGAGAAAACCAA
TTTGAAATCTCTGAAAAGGACATAGATAAAATAAGAACAGAGATATTTAAAGTTGTTATAGAGAATCTAGAGAAAAATTA
TAATAAATCAAAAATATTTTCTATCACTGCTCCTACAGGTACAGGAAAAACAGTTACAGGTTTTTTTGCGGCTTTAAAAT
TGAAAGAATTATTAGGAGGTAATCGAAAAATAATTTATTCATTACCCTTTACCTCAATTATAGAACAAAACTATGGTGTT
CTGTTTGAACTCTTGGAAAAACTCGACAAGTTTAAGGGAAATAGTAGTAGATATATAATAAAGCATCATAATCTAGCAAT
GATAGAATATGAAAGTGAATACAGAGACTATAAAAAAACTGAAGCGGAATTGTTAATAGAAAATTGGCAGAGCGGAATAA
TTATTACAACTTTTGTACAACTTTTGGAAACTCTTGTAGGAGCAAGAAATAGAATGTTGAAAAAATTTAATGCTTTAAAA
GGTTCGATTATAATACTTGATGAAATTCAGGCTATCAATATAAAGTATTTCCAGTTAGTAGATTATATTTTAAATAAGGC
TTCTGAATACTTAGATTTAAGAATAATAATAATGACAGCTACTAAACCGATGATTTTAAATGATGCAGTTGAATTACTTG
ATAATAATGAAAAATATTTTAGTATATTTAAAAGAACAAGGTTAATGCCTCAAATGGAAAAATTAACAATAGAATCTTTT
ATAGAAAAATTCAAAGAAAACTTAGAAGATAAATCCTACTTGATAGTCTGCAATACAATTATGCAGTCCTTAGAAATTTA
TAAGAGGTTAGTAGAATTAGGTCTTAATAGGGAAATATTTTATTTATCGACTAATATACTTCCTTTACATCGACGGGAAA
GAATAAATAAAATAAAGGAGAAATTAGAGAAAGAAGAAAAAATAATACTTGTTTCAACACAGGTAGTTGAAGCAGGAGTT
GACTTTGATTTTGATGTTGTTATAAGAGATTTAGGACCTATTGATTCAATTATTCAGTCAGCGGGAAGATGTAATAGGAA
TGGTAAAAAAGAGATTGGAGATGTGTATGTTTATAAGATGATTGATGAAGAAGAAAACCTGTTTGGCAAATATGTTTATG
GAAATACATTAATGAATATTTCAGAAAATATACTAAAAAGATATGATACAATTATGGAAGAAAAATATTTTCAATTAATA
AACGAATATTTTAGCATGGTGATGCAAAACAAATCTTCACAAGTTTCACGTGAGTTTATAAAGTCAATTGAAAACTTAGA
TTTTTCAGAAGGAGAATATGCCATAGATAGTTTTTCTTTAATAGAAAACAATCCAGGGTATTTTGAAGCTTTCTTTATAT
ATGACGATGTAGCAGAAGACATTTTTAAAAAATATTTAAAACTGTCAAATATTAAGGATTTTAATGCTAGAAGAGAGGCA
TATTTAGAAATTCAGAAAAATATAAAAGATTATATACTTTCTCTTCCCAAAAAATATATTAATAATTTTCAACTGGATAA
AGGTATTCCTTACTTACCTAAAGAAGGTATAAAGGACATATATGATTTTAAAACAGGATTTAAAAGAGATATAGATGATA
AATATATGATATTTTAA

Upstream 100 bases:

>100_bases
ATGAGGATGTAGGACATCCAATTCGAGTGAAAGTTAATGGGGAATTTATCAAACTTTCAAACGGTGAGAATATAGTGTTT
ATGTAAGAAGGTGGTGTATT

Downstream 100 bases:

>100_bases
ATAAATGTCGTCGATGTCCAATAGTGCAAAAACGCCTGGAGATCGACGACATTTTTATTTTTCTGATTTTCATAAAGTAA
TTGATTTTATTGGACAATAT

Product: CRISPR-associated helicase Cas3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 778; Mature: 778

Protein sequence:

>778_residues
MKYYSHYDEEMKYEKLLYEHLIEVKNLSINQIPEEYKKAYEIIALCHDFGKYTSYFQEYLKTKKKTSLSNHSFISAVFGG
YVAIQYYGEENILPLIVYNTILHHHGNLESFSVNLPSKFKDVSRKDFPLNVSEKIDISYKQLKDMRQNLSFIIPDFERLG
LAKEFKQFVEEENVIKDTLAILKKLEALSIRRLKSDENYFIHQMLYSALISADKISASNTYLPEELYVDYKTLNKIRENQ
FEISEKDIDKIRTEIFKVVIENLEKNYNKSKIFSITAPTGTGKTVTGFFAALKLKELLGGNRKIIYSLPFTSIIEQNYGV
LFELLEKLDKFKGNSSRYIIKHHNLAMIEYESEYRDYKKTEAELLIENWQSGIIITTFVQLLETLVGARNRMLKKFNALK
GSIIILDEIQAINIKYFQLVDYILNKASEYLDLRIIIMTATKPMILNDAVELLDNNEKYFSIFKRTRLMPQMEKLTIESF
IEKFKENLEDKSYLIVCNTIMQSLEIYKRLVELGLNREIFYLSTNILPLHRRERINKIKEKLEKEEKIILVSTQVVEAGV
DFDFDVVIRDLGPIDSIIQSAGRCNRNGKKEIGDVYVYKMIDEEENLFGKYVYGNTLMNISENILKRYDTIMEEKYFQLI
NEYFSMVMQNKSSQVSREFIKSIENLDFSEGEYAIDSFSLIENNPGYFEAFFIYDDVAEDIFKKYLKLSNIKDFNARREA
YLEIQKNIKDYILSLPKKYINNFQLDKGIPYLPKEGIKDIYDFKTGFKRDIDDKYMIF

Sequences:

>Translated_778_residues
MKYYSHYDEEMKYEKLLYEHLIEVKNLSINQIPEEYKKAYEIIALCHDFGKYTSYFQEYLKTKKKTSLSNHSFISAVFGG
YVAIQYYGEENILPLIVYNTILHHHGNLESFSVNLPSKFKDVSRKDFPLNVSEKIDISYKQLKDMRQNLSFIIPDFERLG
LAKEFKQFVEEENVIKDTLAILKKLEALSIRRLKSDENYFIHQMLYSALISADKISASNTYLPEELYVDYKTLNKIRENQ
FEISEKDIDKIRTEIFKVVIENLEKNYNKSKIFSITAPTGTGKTVTGFFAALKLKELLGGNRKIIYSLPFTSIIEQNYGV
LFELLEKLDKFKGNSSRYIIKHHNLAMIEYESEYRDYKKTEAELLIENWQSGIIITTFVQLLETLVGARNRMLKKFNALK
GSIIILDEIQAINIKYFQLVDYILNKASEYLDLRIIIMTATKPMILNDAVELLDNNEKYFSIFKRTRLMPQMEKLTIESF
IEKFKENLEDKSYLIVCNTIMQSLEIYKRLVELGLNREIFYLSTNILPLHRRERINKIKEKLEKEEKIILVSTQVVEAGV
DFDFDVVIRDLGPIDSIIQSAGRCNRNGKKEIGDVYVYKMIDEEENLFGKYVYGNTLMNISENILKRYDTIMEEKYFQLI
NEYFSMVMQNKSSQVSREFIKSIENLDFSEGEYAIDSFSLIENNPGYFEAFFIYDDVAEDIFKKYLKLSNIKDFNARREA
YLEIQKNIKDYILSLPKKYINNFQLDKGIPYLPKEGIKDIYDFKTGFKRDIDDKYMIF
>Mature_778_residues
MKYYSHYDEEMKYEKLLYEHLIEVKNLSINQIPEEYKKAYEIIALCHDFGKYTSYFQEYLKTKKKTSLSNHSFISAVFGG
YVAIQYYGEENILPLIVYNTILHHHGNLESFSVNLPSKFKDVSRKDFPLNVSEKIDISYKQLKDMRQNLSFIIPDFERLG
LAKEFKQFVEEENVIKDTLAILKKLEALSIRRLKSDENYFIHQMLYSALISADKISASNTYLPEELYVDYKTLNKIRENQ
FEISEKDIDKIRTEIFKVVIENLEKNYNKSKIFSITAPTGTGKTVTGFFAALKLKELLGGNRKIIYSLPFTSIIEQNYGV
LFELLEKLDKFKGNSSRYIIKHHNLAMIEYESEYRDYKKTEAELLIENWQSGIIITTFVQLLETLVGARNRMLKKFNALK
GSIIILDEIQAINIKYFQLVDYILNKASEYLDLRIIIMTATKPMILNDAVELLDNNEKYFSIFKRTRLMPQMEKLTIESF
IEKFKENLEDKSYLIVCNTIMQSLEIYKRLVELGLNREIFYLSTNILPLHRRERINKIKEKLEKEEKIILVSTQVVEAGV
DFDFDVVIRDLGPIDSIIQSAGRCNRNGKKEIGDVYVYKMIDEEENLFGKYVYGNTLMNISENILKRYDTIMEEKYFQLI
NEYFSMVMQNKSSQVSREFIKSIENLDFSEGEYAIDSFSLIENNPGYFEAFFIYDDVAEDIFKKYLKLSNIKDFNARREA
YLEIQKNIKDYILSLPKKYINNFQLDKGIPYLPKEGIKDIYDFKTGFKRDIDDKYMIF

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: NA

Molecular weight: Translated: 91690; Mature: 91690

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYYSHYDEEMKYEKLLYEHLIEVKNLSINQIPEEYKKAYEIIALCHDFGKYTSYFQEYL
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTKKKTSLSNHSFISAVFGGYVAIQYYGEENILPLIVYNTILHHHGNLESFSVNLPSKFK
HHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCHHHH
DVSRKDFPLNVSEKIDISYKQLKDMRQNLSFIIPDFERLGLAKEFKQFVEEENVIKDTLA
HCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCHHHCCHHHHHHHHHHHHHHHHHHHH
ILKKLEALSIRRLKSDENYFIHQMLYSALISADKISASNTYLPEELYVDYKTLNKIRENQ
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
FEISEKDIDKIRTEIFKVVIENLEKNYNKSKIFSITAPTGTGKTVTGFFAALKLKELLGG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
NRKIIYSLPFTSIIEQNYGVLFELLEKLDKFKGNSSRYIIKHHNLAMIEYESEYRDYKKT
CCEEEEECCHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEECHHHHHHHHH
EAELLIENWQSGIIITTFVQLLETLVGARNRMLKKFNALKGSIIILDEIQAINIKYFQLV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
DYILNKASEYLDLRIIIMTATKPMILNDAVELLDNNEKYFSIFKRTRLMPQMEKLTIESF
HHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHH
IEKFKENLEDKSYLIVCNTIMQSLEIYKRLVELGLNREIFYLSTNILPLHRRERINKIKE
HHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHH
KLEKEEKIILVSTQVVEAGVDFDFDVVIRDLGPIDSIIQSAGRCNRNGKKEIGDVYVYKM
HHCCCCCEEEEEHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCHHHCCEEEEEE
IDEEENLFGKYVYGNTLMNISENILKRYDTIMEEKYFQLINEYFSMVMQNKSSQVSREFI
ECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
KSIENLDFSEGEYAIDSFSLIENNPGYFEAFFIYDDVAEDIFKKYLKLSNIKDFNARREA
HHHHCCCCCCCCEECCCHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHH
YLEIQKNIKDYILSLPKKYINNFQLDKGIPYLPKEGIKDIYDFKTGFKRDIDDKYMIF
HHHHHHHHHHHHHHCCHHHHCCEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEECC
>Mature Secondary Structure
MKYYSHYDEEMKYEKLLYEHLIEVKNLSINQIPEEYKKAYEIIALCHDFGKYTSYFQEYL
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTKKKTSLSNHSFISAVFGGYVAIQYYGEENILPLIVYNTILHHHGNLESFSVNLPSKFK
HHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCHHHH
DVSRKDFPLNVSEKIDISYKQLKDMRQNLSFIIPDFERLGLAKEFKQFVEEENVIKDTLA
HCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCHHHCCHHHHHHHHHHHHHHHHHHHH
ILKKLEALSIRRLKSDENYFIHQMLYSALISADKISASNTYLPEELYVDYKTLNKIRENQ
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
FEISEKDIDKIRTEIFKVVIENLEKNYNKSKIFSITAPTGTGKTVTGFFAALKLKELLGG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
NRKIIYSLPFTSIIEQNYGVLFELLEKLDKFKGNSSRYIIKHHNLAMIEYESEYRDYKKT
CCEEEEECCHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEECHHHHHHHHH
EAELLIENWQSGIIITTFVQLLETLVGARNRMLKKFNALKGSIIILDEIQAINIKYFQLV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
DYILNKASEYLDLRIIIMTATKPMILNDAVELLDNNEKYFSIFKRTRLMPQMEKLTIESF
HHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHH
IEKFKENLEDKSYLIVCNTIMQSLEIYKRLVELGLNREIFYLSTNILPLHRRERINKIKE
HHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHH
KLEKEEKIILVSTQVVEAGVDFDFDVVIRDLGPIDSIIQSAGRCNRNGKKEIGDVYVYKM
HHCCCCCEEEEEHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCHHHCCEEEEEE
IDEEENLFGKYVYGNTLMNISENILKRYDTIMEEKYFQLINEYFSMVMQNKSSQVSREFI
ECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
KSIENLDFSEGEYAIDSFSLIENNPGYFEAFFIYDDVAEDIFKKYLKLSNIKDFNARREA
HHHHCCCCCCCCEECCCHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHH
YLEIQKNIKDYILSLPKKYINNFQLDKGIPYLPKEGIKDIYDFKTGFKRDIDDKYMIF
HHHHHHHHHHHHHHCCHHHHCCEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]