Click here to switch to the map view.

The map label for this gene is pdxS [H]

Identifier: 167040861

GI number: 167040861

Start: 2243043

End: 2243921

Strand: Reverse

Name: pdxS [H]

Synonym: Teth514_2241

Alternate gene names: 167040861

Gene position: 2243921-2243043 (Counterclockwise)

Preceding gene: 167040862

Following gene: 167040860

Centisome position: 91.32

GC content: 41.41

Gene sequence:

>879_bases
ATGAATGAAAGATATGAGCTTAATAAAAACCTTGCGCAAATGCTAAAGGGTGGAGTCATAATGGATGTGACAACACCAGA
ACAGGCGGTTATTGCTGAAAAGGCAGGGGCTGTTGCAGTTATGGCTTTAGAGAGAGTTCCAGCTGATATTAGGGCAAGAG
GCGGAGTCGCAAGAATGTCAGATCCTAAAATAATAAAGGAGATAAAGGCAGCAGTATCAATCCCTGTTATGGCAAAAGTT
AGAATTGGGCATTTTGTGGAAGCACAGATTTTAGAGGCACTTGGGATAGATTTTATTGATGAGAGCGAAGTTTTAACCCC
TGCAGACGAGATGTACCATATAGATAAGTGGGCATTTAAGATACCTTTTGTGTGCGGGGCACGAAACCTTGGAGAAGCAC
TAAGGCGTATAGGGGAAGGTGCTTCTATGATAAGGACAAAAGGAGAAGCAGGTACAGGAAATGTAGTAGAAGCAGTAAGG
CATATGAGGATAATAAATGCCGAAATAAAAAGGCTTACTACTTTAAGAGAAGACGAACTTATGGCTGCTGCTAAAGAACT
TCAAGCGCCATATGACCTTGTAAAATATGTTGCACAACATGGGAGACTTCCGGTTGTAAATTTTGCGGCAGGAGGGATTG
CGACACCAGCGGATGCGGCTTTAATGATGCAGCTTGGTGCAGATGGTGTTTTTGTTGGTTCTGGAATATTTAAGTCACAA
AATCCTGAAAAAATGGCAGAGGCTATAGTAAAAGCTGTAACCTATTACGACAAACCAGAAATATTGGCAGAAGTTTCAGA
AGGATTGGGAGAAGCCATGCAGAGTATTGATATAAGAAAACTTGATGAAAAAGATCTATATGCTTCAAGGGGATGGTAG

Upstream 100 bases:

>100_bases
TTGTATCTATAATGTTCTGATTGATTTGTTTCGATTTAATAGGTACAATTGATATTAAGATATATAAAATGACAATACAA
TTGTAAGGAGGAATAGAACA

Downstream 100 bases:

>100_bases
TTTGCGCGTTGGAGTATTGGCAATTCAGGGCTCTGTTAGAGAACATATTGAAAAATTAAAGCTTATAGATGGTGTAGAAG
CTGTTTTGGCAAAAGACAAA

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MNERYELNKNLAQMLKGGVIMDVTTPEQAVIAEKAGAVAVMALERVPADIRARGGVARMSDPKIIKEIKAAVSIPVMAKV
RIGHFVEAQILEALGIDFIDESEVLTPADEMYHIDKWAFKIPFVCGARNLGEALRRIGEGASMIRTKGEAGTGNVVEAVR
HMRIINAEIKRLTTLREDELMAAAKELQAPYDLVKYVAQHGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSQ
NPEKMAEAIVKAVTYYDKPEILAEVSEGLGEAMQSIDIRKLDEKDLYASRGW

Sequences:

>Translated_292_residues
MNERYELNKNLAQMLKGGVIMDVTTPEQAVIAEKAGAVAVMALERVPADIRARGGVARMSDPKIIKEIKAAVSIPVMAKV
RIGHFVEAQILEALGIDFIDESEVLTPADEMYHIDKWAFKIPFVCGARNLGEALRRIGEGASMIRTKGEAGTGNVVEAVR
HMRIINAEIKRLTTLREDELMAAAKELQAPYDLVKYVAQHGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSQ
NPEKMAEAIVKAVTYYDKPEILAEVSEGLGEAMQSIDIRKLDEKDLYASRGW
>Mature_292_residues
MNERYELNKNLAQMLKGGVIMDVTTPEQAVIAEKAGAVAVMALERVPADIRARGGVARMSDPKIIKEIKAAVSIPVMAKV
RIGHFVEAQILEALGIDFIDESEVLTPADEMYHIDKWAFKIPFVCGARNLGEALRRIGEGASMIRTKGEAGTGNVVEAVR
HMRIINAEIKRLTTLREDELMAAAKELQAPYDLVKYVAQHGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSQ
NPEKMAEAIVKAVTYYDKPEILAEVSEGLGEAMQSIDIRKLDEKDLYASRGW

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring [H]

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6321049, Length=281, Percent_Identity=66.5480427046263, Blast_Score=377, Evalue=1e-106,
Organism=Saccharomyces cerevisiae, GI6323743, Length=290, Percent_Identity=64.8275862068965, Blast_Score=377, Evalue=1e-105,
Organism=Saccharomyces cerevisiae, GI6323996, Length=281, Percent_Identity=66.1921708185053, Blast_Score=376, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852 [H]

Pfam domain/function: PF01680 SOR_SNZ [H]

EC number: NA

Molecular weight: Translated: 31779; Mature: 31779

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: PS01235 PDXS_SNZ_1 ; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNERYELNKNLAQMLKGGVIMDVTTPEQAVIAEKAGAVAVMALERVPADIRARGGVARMS
CCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCHHHHHHHHHCCHHHHHCCCCCCCC
DPKIIKEIKAAVSIPVMAKVRIGHFVEAQILEALGIDFIDESEVLTPADEMYHIDKWAFK
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHEE
IPFVCGARNLGEALRRIGEGASMIRTKGEAGTGNVVEAVRHMRIINAEIKRLTTLREDEL
CCHHHCCHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MAAAKELQAPYDLVKYVAQHGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSQ
HHHHHHHCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCCCC
NPEKMAEAIVKAVTYYDKPEILAEVSEGLGEAMQSIDIRKLDEKDLYASRGW
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHCCCCHHHHCCCCC
>Mature Secondary Structure
MNERYELNKNLAQMLKGGVIMDVTTPEQAVIAEKAGAVAVMALERVPADIRARGGVARMS
CCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCHHHHHHHHHCCHHHHHCCCCCCCC
DPKIIKEIKAAVSIPVMAKVRIGHFVEAQILEALGIDFIDESEVLTPADEMYHIDKWAFK
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHEE
IPFVCGARNLGEALRRIGEGASMIRTKGEAGTGNVVEAVRHMRIINAEIKRLTTLREDEL
CCHHHCCHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MAAAKELQAPYDLVKYVAQHGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSQ
HHHHHHHCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCCCC
NPEKMAEAIVKAVTYYDKPEILAEVSEGLGEAMQSIDIRKLDEKDLYASRGW
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA