Click here to switch to the map view.

The map label for this gene is dapF [H]

Identifier: 167040401

GI number: 167040401

Start: 1767424

End: 1768233

Strand: Reverse

Name: dapF [H]

Synonym: Teth514_1764

Alternate gene names: 167040401

Gene position: 1768233-1767424 (Counterclockwise)

Preceding gene: 167040402

Following gene: 167040400

Centisome position: 71.96

GC content: 35.68

Gene sequence:

>810_bases
ATGCATGGATTGGGAAATGACTTTATAGTAATTGAGGCTCGAGAAAATGTAGATTATAGTGAATTAGCTATTAAACTTTG
TGATAGGCATTTTGGTATAGGGGCGGATGGTCTTTTAGTCGTTGAGCCTTCAGGAATTGCGGATATTAGGATGAGGATTT
TTAATGCAGATGGTAGCGAAGCAGAAATGTGCGGTAATGGTTCTAGGTGTTTTGCAAAATATGTTTATGAAAGAGGGATA
GTAAAAAAAGAGAAAATGGCAGTGGAAACCTTAGCGGGAGTGATTATGCCAGAAGTTTTTGTAGAAAATGGGAAAGTAGA
AAGTGTAAAAGTTTACATGGGTAGTCCTATTTTTGAGGCTAATAAAATACCTGTAAAAACTGATAAGCAAAAATTTATAA
ATGAGCCGGTAAAAATAGATGGGAAAGTTTATAAATTAACTTCTATAAGAGTAGGAGTGCCTCATACTATTGTTTTTGTA
AAATCCTTAGATGAAAATATGATTAAAGAATTAGGTCCTAAAATTGAAAAATCTTCCATTTTTCCTCAAGGTACAAATGT
GGATTTTGTAAAAGTAGAAGATAAAGAAAATATTTCTGTAAGGACTTGGGAAAGAGGTGTGGGGCTTACTCTTGCCTGTG
GAAGTGGTGCCTGTGCCTCTGCAGTAGCTTCAGCAGTTTTAGGTAAGACGGAGCGAAATGTCAATGTCCATTTTAAAGGT
GGTAAACTTTTAGTAGAATGGCTGGATGACAATAGTATTTATTTATCTGGAAGTGTGGAAGAAGTCTTCAGGGGCGAAAT
AGAGCTTTAG

Upstream 100 bases:

>100_bases
TCCTCACATTTTCTTAAAATATCTAACCAAATTAGCCTTTTTTGTGTTATAATATCCTTGAAGATTAGAAAATGGAGTGA
TATAGGTGAAATTTACTAAA

Downstream 100 bases:

>100_bases
TTTAATACAGTGAGAATTTGACTATAATAAGAAAAAGGTGATATGATGATAAAAAGCATGACCGGTTATGGAAGAGGTGA
GATTAAGGAAAAAGGCTATT

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MHGLGNDFIVIEARENVDYSELAIKLCDRHFGIGADGLLVVEPSGIADIRMRIFNADGSEAEMCGNGSRCFAKYVYERGI
VKKEKMAVETLAGVIMPEVFVENGKVESVKVYMGSPIFEANKIPVKTDKQKFINEPVKIDGKVYKLTSIRVGVPHTIVFV
KSLDENMIKELGPKIEKSSIFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVLGKTERNVNVHFKG
GKLLVEWLDDNSIYLSGSVEEVFRGEIEL

Sequences:

>Translated_269_residues
MHGLGNDFIVIEARENVDYSELAIKLCDRHFGIGADGLLVVEPSGIADIRMRIFNADGSEAEMCGNGSRCFAKYVYERGI
VKKEKMAVETLAGVIMPEVFVENGKVESVKVYMGSPIFEANKIPVKTDKQKFINEPVKIDGKVYKLTSIRVGVPHTIVFV
KSLDENMIKELGPKIEKSSIFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVLGKTERNVNVHFKG
GKLLVEWLDDNSIYLSGSVEEVFRGEIEL
>Mature_269_residues
MHGLGNDFIVIEARENVDYSELAIKLCDRHFGIGADGLLVVEPSGIADIRMRIFNADGSEAEMCGNGSRCFAKYVYERGI
VKKEKMAVETLAGVIMPEVFVENGKVESVKVYMGSPIFEANKIPVKTDKQKFINEPVKIDGKVYKLTSIRVGVPHTIVFV
KSLDENMIKELGPKIEKSSIFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVLGKTERNVNVHFKG
GKLLVEWLDDNSIYLSGSVEEVFRGEIEL

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=276, Percent_Identity=38.4057971014493, Blast_Score=184, Evalue=6e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 29536; Mature: 29536

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHGLGNDFIVIEARENVDYSELAIKLCDRHFGIGADGLLVVEPSGIADIRMRIFNADGSE
CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEECCCCCC
AEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGKVESVKVYMGSPIFEA
HHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEC
NKIPVKTDKQKFINEPVKIDGKVYKLTSIRVGVPHTIVFVKSLDENMIKELGPKIEKSSI
CCCCCCCCHHHHCCCCEEECCEEEEEEEEEECCCEEEEEEEHHCHHHHHHHCCCCCCCCC
FPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVLGKTERNVNVHFKG
CCCCCCEEEEEECCCCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEC
GKLLVEWLDDNSIYLSGSVEEVFRGEIEL
CEEEEEEECCCCEEEECCHHHHHCCCCCC
>Mature Secondary Structure
MHGLGNDFIVIEARENVDYSELAIKLCDRHFGIGADGLLVVEPSGIADIRMRIFNADGSE
CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEECCCCCC
AEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGKVESVKVYMGSPIFEA
HHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEC
NKIPVKTDKQKFINEPVKIDGKVYKLTSIRVGVPHTIVFVKSLDENMIKELGPKIEKSSI
CCCCCCCCHHHHCCCCEEECCEEEEEEEEEECCCEEEEEEEHHCHHHHHHHCCCCCCCCC
FPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVLGKTERNVNVHFKG
CCCCCCEEEEEECCCCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEC
GKLLVEWLDDNSIYLSGSVEEVFRGEIEL
CEEEEEEECCCCEEEECCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]