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The map label for this gene is rimM

Identifier: 167040347

GI number: 167040347

Start: 1719506

End: 1720009

Strand: Reverse

Name: rimM

Synonym: Teth514_1710

Alternate gene names: 167040347

Gene position: 1720009-1719506 (Counterclockwise)

Preceding gene: 167040348

Following gene: 167040346

Centisome position: 70.0

GC content: 35.32

Gene sequence:

>504_bases
ATGGCTGATTATTATAATGTAGGAAAAGTTACTTCTGCCCATGGCATTAAGGGCGAAGTTAAAGTATATCCTCTTACCAA
TGTTCCCGAAAGGTTTTATGACCTTGAGTATGTATGGATTTTTGATGACCAACAAAGGCCCCACAAATATGACATTGAAT
ATGTCAAGATTATATCTAAAGGAGTTTGTGTAAAATTAAAAGGAATTGATACTAGAGGCGATGCAGAAAAATTAAAAGGG
GCCTTTTTAAAAGTTGACTCTCAAAATGCTTTGGAGTTAGAAGAAAATGAATATTTCATCAAAGATTTAGTCGGGATGAA
GGTGTATACAGAAGAAGGAAGTTTTCTGGGTACATTGGTAGAGGTACTTAAGACAGGTGCAAATGATGTGTATGTAATAA
AAACTGAGGAGAGGGAAATACTAATTCCTGCTATAAAAGAAGTGGTTAAAAAAGTTGATGTTGACAATAAAGTAATGGTG
GTCCACCTTCTGGAGGGGCTATGA

Upstream 100 bases:

>100_bases
GGAAACAGGGAAGGATTGCTCAAGCAATTCGCACGTTGGTTAAAGCTGCTGCCTTAAAAGAAAAGAAACGTGTGATTGTT
GAGATAATTTAGGTGGTGGT

Downstream 100 bases:

>100_bases
TGATTTTTGACGTTTTAACCCTATTTCCTGAAATGTTTGATAGTGTTTTATCCTATAGTATATTGAAAAGGGCTATTGAA
AAAGGAAAAATAAAAGTTAA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MADYYNVGKVTSAHGIKGEVKVYPLTNVPERFYDLEYVWIFDDQQRPHKYDIEYVKIISKGVCVKLKGIDTRGDAEKLKG
AFLKVDSQNALELEENEYFIKDLVGMKVYTEEGSFLGTLVEVLKTGANDVYVIKTEEREILIPAIKEVVKKVDVDNKVMV
VHLLEGL

Sequences:

>Translated_167_residues
MADYYNVGKVTSAHGIKGEVKVYPLTNVPERFYDLEYVWIFDDQQRPHKYDIEYVKIISKGVCVKLKGIDTRGDAEKLKG
AFLKVDSQNALELEENEYFIKDLVGMKVYTEEGSFLGTLVEVLKTGANDVYVIKTEEREILIPAIKEVVKKVDVDNKVMV
VHLLEGL
>Mature_166_residues
ADYYNVGKVTSAHGIKGEVKVYPLTNVPERFYDLEYVWIFDDQQRPHKYDIEYVKIISKGVCVKLKGIDTRGDAEKLKGA
FLKVDSQNALELEENEYFIKDLVGMKVYTEEGSFLGTLVEVLKTGANDVYVIKTEEREILIPAIKEVVKKVDVDNKVMVV
HLLEGL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=168, Percent_Identity=33.9285714285714, Blast_Score=90, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_THEP3 (B0K9W5)

Other databases:

- EMBL:   CP000924
- RefSeq:   YP_001665264.1
- ProteinModelPortal:   B0K9W5
- SMR:   B0K9W5
- GeneID:   5875146
- GenomeReviews:   CP000924_GR
- KEGG:   tpd:Teth39_1274
- HOGENOM:   HBG703775
- OMA:   IASHRKH
- ProtClustDB:   PRK00122
- BioCyc:   TPSE340099:TETH39_1274-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19034; Mature: 18903

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADYYNVGKVTSAHGIKGEVKVYPLTNVPERFYDLEYVWIFDDQQRPHKYDIEYVKIISK
CCCCCCCCCEECCCCCCCEEEEEECCCCCHHHHCEEEEEEECCCCCCCCCCCCEEEEECC
GVCVKLKGIDTRGDAEKLKGAFLKVDSQNALELEENEYFIKDLVGMKVYTEEGSFLGTLV
CEEEEEECCCCCCCHHHHCCEEEEECCCCCEEECCCCEEEHHHHCEEEEECCCCHHHHHH
EVLKTGANDVYVIKTEEREILIPAIKEVVKKVDVDNKVMVVHLLEGL
HHHHCCCCCEEEEEECCCEEEHHHHHHHHHHCCCCCCEEEEEEECCC
>Mature Secondary Structure 
ADYYNVGKVTSAHGIKGEVKVYPLTNVPERFYDLEYVWIFDDQQRPHKYDIEYVKIISK
CCCCCCCCEECCCCCCCEEEEEECCCCCHHHHCEEEEEEECCCCCCCCCCCCEEEEECC
GVCVKLKGIDTRGDAEKLKGAFLKVDSQNALELEENEYFIKDLVGMKVYTEEGSFLGTLV
CEEEEEECCCCCCCHHHHCCEEEEECCCCCEEECCCCEEEHHHHCEEEEECCCCHHHHHH
EVLKTGANDVYVIKTEEREILIPAIKEVVKKVDVDNKVMVVHLLEGL
HHHHCCCCCEEEEEECCCEEEHHHHHHHHHHCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA