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The map label for this gene is rnhB [H]

Identifier: 167040339

GI number: 167040339

Start: 1712898

End: 1713626

Strand: Direct

Name: rnhB [H]

Synonym: Teth514_1702

Alternate gene names: 167040339

Gene position: 1712898-1713626 (Clockwise)

Preceding gene: 167040254

Following gene: 167040340

Centisome position: 69.71

GC content: 31.0

Gene sequence:

>729_bases
ATGTCAAACTTATATAACCTACGCCAACTCAAAAACTATTTATACCAAAATCCCTTTTGTGACTTTCAATCTCTCAGCTT
AAATGAAGCAGCTAAAAAGTGGCTTGAAAAAGAAATAGAAAGAATAAATAACCTAAAATACTATGAAAATCAATTATATC
AATTAAATTTAAATTTCATTGCTGGAGTAGACGAGGCGGGAAGAGGTCCTTTAGTAGGACCAGTAGTTGCCGCCTGTGTA
ATACTTCCTAAAGAAGTTTTCATCCCTGAGATAAATGACTCGAAAAAACTATCTGAAGAAAAAAGAGAAGTATTGTCGGA
GGTAATAAAAAAAGTAGCTATCTCGTATGCCATTGGAATAGTTGATTGCGAAGAAATTGATAAAATAAATATATTAAATG
CTACCTACAAAGCCATGCAGATTGCTATTTCAAAAATACAACAAAAAATTGATTACCTTTTAGTAGATGCTATTACCATT
CCTCAAATAGAGATAAATCAAAAAGCTATAGTAAAAGGAGATTCAAAAAGTATTTCTATAGCTGCTGCCTCTATACTGGC
AAAGGTTGAAAGAGATAAAATAATGAAAGAATACCACAAAATCTATCCTCAGTATAATTTTGAAAAAAACAAAGGTTATG
GTACAAAAGAACATATTGAAGCTTTAAAAAAATACGGTCCCTGTCCTATCCACAGAAAGACTTTTATTGAAAAAATTCTG
AAAGGATGA

Upstream 100 bases:

>100_bases
TCTCTTCCCATAATTACTCCCCTTTAACATCGTTTTCCCTAATTATCTTTATTATAATACATAACCTGTGATAAAATAAA
GAAAAAAGAAAGGTGATACA

Downstream 100 bases:

>100_bases
AAAACATTGAACAAAAAAACAATAGGCAGCTTAGGAGAAAAAATAGCTGCCCAATATCTATTAAAATCAGGTTATAAAAT
TTTAGAGAAAAATTTTAAAT

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSNLYNLRQLKNYLYQNPFCDFQSLSLNEAAKKWLEKEIERINNLKYYENQLYQLNLNFIAGVDEAGRGPLVGPVVAACV
ILPKEVFIPEINDSKKLSEEKREVLSEVIKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITI
PQIEINQKAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYGPCPIHRKTFIEKIL
KG

Sequences:

>Translated_242_residues
MSNLYNLRQLKNYLYQNPFCDFQSLSLNEAAKKWLEKEIERINNLKYYENQLYQLNLNFIAGVDEAGRGPLVGPVVAACV
ILPKEVFIPEINDSKKLSEEKREVLSEVIKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITI
PQIEINQKAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYGPCPIHRKTFIEKIL
KG
>Mature_241_residues
SNLYNLRQLKNYLYQNPFCDFQSLSLNEAAKKWLEKEIERINNLKYYENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVI
LPKEVFIPEINDSKKLSEEKREVLSEVIKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIP
QIEINQKAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYGPCPIHRKTFIEKILK
G

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=180, Percent_Identity=46.6666666666667, Blast_Score=164, Evalue=7e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 27701; Mature: 27569

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLYNLRQLKNYLYQNPFCDFQSLSLNEAAKKWLEKEIERINNLKYYENQLYQLNLNFI
CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCEEEEEEHHE
AGVDEAGRGPLVGPVVAACVILPKEVFIPEINDSKKLSEEKREVLSEVIKKVAISYAIGI
ECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
VDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQIEINQKAIVKGDSKSISI
CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEECCCHHEEECCCCCHHH
AAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYGPCPIHRKTFIEKIL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
KG
CC
>Mature Secondary Structure 
SNLYNLRQLKNYLYQNPFCDFQSLSLNEAAKKWLEKEIERINNLKYYENQLYQLNLNFI
CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCEEEEEEHHE
AGVDEAGRGPLVGPVVAACVILPKEVFIPEINDSKKLSEEKREVLSEVIKKVAISYAIGI
ECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
VDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQIEINQKAIVKGDSKSISI
CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEECCCHHEEECCCCCHHH
AAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYGPCPIHRKTFIEKIL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
KG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]