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The map label for this gene is rbfA [H]

Identifier: 167040281

GI number: 167040281

Start: 1661201

End: 1661560

Strand: Reverse

Name: rbfA [H]

Synonym: Teth514_1644

Alternate gene names: 167040281

Gene position: 1661560-1661201 (Counterclockwise)

Preceding gene: 167040282

Following gene: 167040280

Centisome position: 67.62

GC content: 31.11

Gene sequence:

>360_bases
ATGCAGTACAGGAATAGTCGACTTTCAGAAGAAATGAAAAGAGAAATAAGTAAAATGATTTTAGAAGAAATTAAAGACCC
AAGAATTAAAGCAATGGTTAGTATAACTGACATAGAAGTTACTAAAGATTTGAGATATGCTAAAGTTTATGTAAGTATTT
ATGGAAGTGAAGAAGATAAACAAGAAACTTTTGAAGGGCTAAAAAGTGCAGCTGGCTACATCAGACACGAAATTGGAAGA
AGAATAAAAATGAGATATACTCCTGAAATTATCTTTGAATTGGATCGATCAATAGAATACGGAGCTCACATTTCTGAAAT
ATTAAAAGAACTAAACAAGCAAGAGGGTGATGGTAATTGA

Upstream 100 bases:

>100_bases
GAATGTGGTATAGGTATAGATAGGTTCAATGACATTAAAGAGGGGGATATAATAGAAGCTTACCAAATGGAAGAAATTCC
TCGTTGAAAGGATGAGTATA

Downstream 100 bases:

>100_bases
TATTAATTGATGCAATAAATCACATAAAAGATGCTAAAAGTGTAATTGTAGTATCTCACATTGCACCCGATGGAGATGCT
ATAGGCACTGTTACAGGAAT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MQYRNSRLSEEMKREISKMILEEIKDPRIKAMVSITDIEVTKDLRYAKVYVSIYGSEEDKQETFEGLKSAAGYIRHEIGR
RIKMRYTPEIIFELDRSIEYGAHISEILKELNKQEGDGN

Sequences:

>Translated_119_residues
MQYRNSRLSEEMKREISKMILEEIKDPRIKAMVSITDIEVTKDLRYAKVYVSIYGSEEDKQETFEGLKSAAGYIRHEIGR
RIKMRYTPEIIFELDRSIEYGAHISEILKELNKQEGDGN
>Mature_119_residues
MQYRNSRLSEEMKREISKMILEEIKDPRIKAMVSITDIEVTKDLRYAKVYVSIYGSEEDKQETFEGLKSAAGYIRHEIGR
RIKMRYTPEIIFELDRSIEYGAHISEILKELNKQEGDGN

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=114, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13992; Mature: 13992

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYRNSRLSEEMKREISKMILEEIKDPRIKAMVSITDIEVTKDLRYAKVYVSIYGSEEDK
CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHEEHHHHHHHHHHHHHHHEEEEECCCCHH
QETFEGLKSAAGYIRHEIGRRIKMRYTPEIIFELDRSIEYGAHISEILKELNKQEGDGN
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQYRNSRLSEEMKREISKMILEEIKDPRIKAMVSITDIEVTKDLRYAKVYVSIYGSEEDK
CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHEEHHHHHHHHHHHHHHHEEEEECCCCHH
QETFEGLKSAAGYIRHEIGRRIKMRYTPEIIFELDRSIEYGAHISEILKELNKQEGDGN
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]