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The map label for this gene is deoC [H]

Identifier: 167039986

GI number: 167039986

Start: 1381622

End: 1382293

Strand: Direct

Name: deoC [H]

Synonym: Teth514_1345

Alternate gene names: 167039986

Gene position: 1381622-1382293 (Clockwise)

Preceding gene: 167039985

Following gene: 167039987

Centisome position: 56.23

GC content: 38.1

Gene sequence:

>672_bases
ATGAACATAGCAAAAATGATTGACCACACTCTACTGAAGCCAAATGCGACAAAAAGTGAAATAGAAAAACTTTGTAATGA
GGCAAAAGAGTATGGATTTGCTTCTGTCTGCATAAACCCCTGCTTTGTAGACCTTGCCTATAGTATGTTGAAAGATACAG
ATGTTAAAGTTTGCACAGTGATAGGTTTTCCATTAGGTGCAAATACTATCGAAACCAAAGTATTTGAAGCAGTTGAAGCG
GTTAAAAAAGGTGCGACAGAAGTTGACATGGTATTAAATATAAGCATGTTGAAGAGTGGAGATTACGACTATGTAAAAAA
AGAAATTGAAGAAGTTGTGAAAGCGGTAAAATCCTATGGAGATATAGTTGTAAAAGTAATTTTAGAAACCTGTTATCTCA
CTGTTGAAGAAAAAGTAAAAGCATGTCAGCTCACAAAAGAAGCAGGTGCTGATTTTGTTAAGACTTCTACTGGTTTTGGG
CCAGGTGGAGCGACGGTAGAGGATGTAAAATTAATGAGACAGGCAGTTGGTGAAAACTTTGGTGTTAAAGCTTCTGGCGG
TGTAAGAACTGCTGAAGATGCTAAGGCGATGATTGAAGCAGGAGCCAATCGGATTGGGGCAAGTGCAGGCGTTAAGATTG
TGGAGGAATGGAATAAACTAAAAATGAGTTGA

Upstream 100 bases:

>100_bases
GGAGAGACAATACAACGTTACTTAAAAAATTAGGATATGCCATTGACAAGAAAACTTACGAATAGTAAAGTATTTAGTGA
AAACAAAAGGAGGTTATGTC

Downstream 100 bases:

>100_bases
TAAAAATGCGCTTGTTAAAAACAGAAGCAATAGTATTAAAAAACAATTTAATAGGTGAAACAGACAAAATAGCCACCCTT
TTTACTAAAAGCTATGGTAA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MNIAKMIDHTLLKPNATKSEIEKLCNEAKEYGFASVCINPCFVDLAYSMLKDTDVKVCTVIGFPLGANTIETKVFEAVEA
VKKGATEVDMVLNISMLKSGDYDYVKKEIEEVVKAVKSYGDIVVKVILETCYLTVEEKVKACQLTKEAGADFVKTSTGFG
PGGATVEDVKLMRQAVGENFGVKASGGVRTAEDAKAMIEAGANRIGASAGVKIVEEWNKLKMS

Sequences:

>Translated_223_residues
MNIAKMIDHTLLKPNATKSEIEKLCNEAKEYGFASVCINPCFVDLAYSMLKDTDVKVCTVIGFPLGANTIETKVFEAVEA
VKKGATEVDMVLNISMLKSGDYDYVKKEIEEVVKAVKSYGDIVVKVILETCYLTVEEKVKACQLTKEAGADFVKTSTGFG
PGGATVEDVKLMRQAVGENFGVKASGGVRTAEDAKAMIEAGANRIGASAGVKIVEEWNKLKMS
>Mature_223_residues
MNIAKMIDHTLLKPNATKSEIEKLCNEAKEYGFASVCINPCFVDLAYSMLKDTDVKVCTVIGFPLGANTIETKVFEAVEA
VKKGATEVDMVLNISMLKSGDYDYVKKEIEEVVKAVKSYGDIVVKVILETCYLTVEEKVKACQLTKEAGADFVKTSTGFG
PGGATVEDVKLMRQAVGENFGVKASGGVRTAEDAKAMIEAGANRIGASAGVKIVEEWNKLKMS

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=220, Percent_Identity=33.6363636363636, Blast_Score=91, Evalue=1e-18,
Organism=Escherichia coli, GI1790841, Length=214, Percent_Identity=33.1775700934579, Blast_Score=99, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17533015, Length=216, Percent_Identity=31.0185185185185, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI19922098, Length=224, Percent_Identity=29.9107142857143, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 24036; Mature: 24036

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIAKMIDHTLLKPNATKSEIEKLCNEAKEYGFASVCINPCFVDLAYSMLKDTDVKVCTV
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
IGFPLGANTIETKVFEAVEAVKKGATEVDMVLNISMLKSGDYDYVKKEIEEVVKAVKSYG
EECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
DIVVKVILETCYLTVEEKVKACQLTKEAGADFVKTSTGFGPGGATVEDVKLMRQAVGENF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCC
GVKASGGVRTAEDAKAMIEAGANRIGASAGVKIVEEWNKLKMS
CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNIAKMIDHTLLKPNATKSEIEKLCNEAKEYGFASVCINPCFVDLAYSMLKDTDVKVCTV
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
IGFPLGANTIETKVFEAVEAVKKGATEVDMVLNISMLKSGDYDYVKKEIEEVVKAVKSYG
EECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
DIVVKVILETCYLTVEEKVKACQLTKEAGADFVKTSTGFGPGGATVEDVKLMRQAVGENF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCC
GVKASGGVRTAEDAKAMIEAGANRIGASAGVKIVEEWNKLKMS
CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA