| Definition | Thermoanaerobacter sp. X514 chromosome, complete genome. |
|---|---|
| Accession | NC_010320 |
| Length | 2,457,259 |
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The map label for this gene is agaR [H]
Identifier: 167039743
GI number: 167039743
Start: 1131026
End: 1133227
Strand: Direct
Name: agaR [H]
Synonym: Teth514_1094
Alternate gene names: 167039743
Gene position: 1131026-1133227 (Clockwise)
Preceding gene: 167039742
Following gene: 167039744
Centisome position: 46.03
GC content: 34.29
Gene sequence:
>2202_bases ATGTCTATTCATTTTAATGATAAAACAAAAACTTTTTACCTAACTGCCAAAGATACAAGTTATGTAATTTATGTTTTAAA AAATGGCGCTGTTTTACATGCATATTTTGGCAAAATAATAAAGACTCCTAATATATACCATTTATTAAAATTACCCCATA TAAGTATAGATAATGATATTATTAACTTTGGGAATCAGTTAATGCTAGATTTTTTGCCACAGGAGTATCCTGCGTATGGT AATACTGATTTTAGGAGTCCTGCATATCAAATTCAGCTTGAAAACGGTTCTACTGTTTCTGATCTAAGGTACTTATCTCA CAAAATCTATAAAGGTAAGCCTAAATTAGAAGGGCTTCCGGCTACTTATGTTGAAAATGAAGATGAAGCTGATACTCTTG AGTTAGAATTGTATGATAAAGTAGCTAATTTAAAGGTAACTTTAATTTATACAGCATTTAGGGATTATGATGTTATAACA AGGTCAGTGAGATTTGAAAACATGGGAAAAGAAGACATAAAATTGTTAAGAGCTTTGTCTATGAATGTTGATTTTAATGA TAGTAATTTTGACATGCTTCAATTGTCAGGAGCTTGGGCGAGAGAAAGACATGTTATAAGAAGACCGCTTGTACCAGGAG CCCAGTCTATTGAAAGCAGAAGAGGTGCAAGCAGCCATCAGCAAAATCCTTTTATAGCACTTTTAAGGAACGACGCTGAT GAATGGCATGGAGATGTGTATGGATTTAGCCTTGTTTACAGTGGCAATTTCTTGGCACAAGTAGAAGTAGATCAATATAA TATGGCAAGAGTTTCTATGGGAATCAATCCATTTGATTTTTCATGGCTTCTAAAACCAGGTGAAACATTTCAAACACCAG AAGTCGTTATGGTTTATTCGGATGGTGGCTTAAATAAAATGTCAAATACCTATCACAAACTGTACAGAAATAGACTTATG AGAAGTAAATTTAAGGACAGAGAAACACCAATTCTTATAAACAACTGGGAAGCTACTTATTTTGATTTTACAGAAGAAAA ACTTAAAGAACTTGCTAAAGAAGCTAAAGATTTGGGGATTGAACTGTTTGTTCTTGACGATGGATGGTTTGGAAAGAGAA ATTCTGACAATTCTTCACTGGGAGATTGGTTTGTAAATAAAGAAAAGATTCCAAGTGGTTTGGATGGCCTTGCAAAAGGG ATAAATTCTTTAGGTTTAAAATTTGGATTATGGATGGAACCAGAAATGGTGTCTCCTGATAGTGACCTCTATAGAGAGCA TCCCGATTGGTGTATACATGTACCTAATAGGTCGAGAAGTGAAAGCAGAAATCAACTTGTGTTAGACTTGTCGCGCAAAG ATGTACAAGATTATATTATAAAAGTAGTGTCAGATATTTTGGAAAGCGCCAACATAAGTTATGTAAAATGGGATATGAAT AGAAATATGACAGAGATAGGCTCTGCACTTTTGCCTCCTGAAAGACAAAGAGAAACTGCTCACAGATATATACTTGGACT TTACAGAATATTAGAAGAAATAACGACAAGGTTTCCTGATGTTTTGTTTGAAAGTTGTGCTGGTGGTGGTGGTCGTTTCG ATCCAGGAATGCTTTATTACATGCCACAGACTTGGACCAGTGATGATACAGATGCAATTGAAAGACTTAAAATACAGTAT GGTACAAGTATAGTTTATCCTCTTATTTCAATGGGAAGCCACATATCCGCTGTACCAAATCATCAAGTTCACAGAATTAC GCCGTTAAAAATACGTGCACATGTAGCAATGTCAGCTAATTTTGGCTTTGAACTTGATTTGACAAAATTGAGCAGTGAAG AAAAAGATGAAATAAAGAAATATGTTGAAAAGTATAAAGAGATTAGGAAACTGGTGCAATTTGGAGATTTTTATCGATTG TTAAGTCCCTTTGAAGGGAATGAAACTGCTTGGTTGATTGTTTCTGAGGATAAAAGAGAATTTTTGCTCTATTATTTTAG AGTTTTGGGAGGAGCAAATGAACCTATTAAAAGACTTCGTCTAAAAGGGATAAATCCAGATTTTAATTATGTTTTAGAAG ATGATGGTAGTGAATATAGTGGTGATGAACTTATGTATGCAGGGAAAGTAATTCCAGAACTTAAAGGGGACTTTCAGAGC ATTATGATGCATTTTAAGGAGGAGAGTATTAAAGATGGGTAG
Upstream 100 bases:
>100_bases TTTTTTTAAGGAGTTATGAGATGCTTTTGTTGAAATGAGAAAATTAAAGAAAAACTAAGATATTAAGAGAAAATAAAAAA TAATATAAGGAGGACTTACT
Downstream 100 bases:
>100_bases AGAGATTTTAAATTTTAATGTAGATTGGCTATATATTCCTGAAGACTTAAATGATGCATATAAACTTGATTTTGATGAAA GCAATTTTGAATTTGTTAGT
Product: glycoside hydrolase, clan GH-D
Products: NA
Alternate protein names: Melibiase [H]
Number of amino acids: Translated: 733; Mature: 732
Protein sequence:
>733_residues MSIHFNDKTKTFYLTAKDTSYVIYVLKNGAVLHAYFGKIIKTPNIYHLLKLPHISIDNDIINFGNQLMLDFLPQEYPAYG NTDFRSPAYQIQLENGSTVSDLRYLSHKIYKGKPKLEGLPATYVENEDEADTLELELYDKVANLKVTLIYTAFRDYDVIT RSVRFENMGKEDIKLLRALSMNVDFNDSNFDMLQLSGAWARERHVIRRPLVPGAQSIESRRGASSHQQNPFIALLRNDAD EWHGDVYGFSLVYSGNFLAQVEVDQYNMARVSMGINPFDFSWLLKPGETFQTPEVVMVYSDGGLNKMSNTYHKLYRNRLM RSKFKDRETPILINNWEATYFDFTEEKLKELAKEAKDLGIELFVLDDGWFGKRNSDNSSLGDWFVNKEKIPSGLDGLAKG INSLGLKFGLWMEPEMVSPDSDLYREHPDWCIHVPNRSRSESRNQLVLDLSRKDVQDYIIKVVSDILESANISYVKWDMN RNMTEIGSALLPPERQRETAHRYILGLYRILEEITTRFPDVLFESCAGGGGRFDPGMLYYMPQTWTSDDTDAIERLKIQY GTSIVYPLISMGSHISAVPNHQVHRITPLKIRAHVAMSANFGFELDLTKLSSEEKDEIKKYVEKYKEIRKLVQFGDFYRL LSPFEGNETAWLIVSEDKREFLLYYFRVLGGANEPIKRLRLKGINPDFNYVLEDDGSEYSGDELMYAGKVIPELKGDFQS IMMHFKEESIKDG
Sequences:
>Translated_733_residues MSIHFNDKTKTFYLTAKDTSYVIYVLKNGAVLHAYFGKIIKTPNIYHLLKLPHISIDNDIINFGNQLMLDFLPQEYPAYG NTDFRSPAYQIQLENGSTVSDLRYLSHKIYKGKPKLEGLPATYVENEDEADTLELELYDKVANLKVTLIYTAFRDYDVIT RSVRFENMGKEDIKLLRALSMNVDFNDSNFDMLQLSGAWARERHVIRRPLVPGAQSIESRRGASSHQQNPFIALLRNDAD EWHGDVYGFSLVYSGNFLAQVEVDQYNMARVSMGINPFDFSWLLKPGETFQTPEVVMVYSDGGLNKMSNTYHKLYRNRLM RSKFKDRETPILINNWEATYFDFTEEKLKELAKEAKDLGIELFVLDDGWFGKRNSDNSSLGDWFVNKEKIPSGLDGLAKG INSLGLKFGLWMEPEMVSPDSDLYREHPDWCIHVPNRSRSESRNQLVLDLSRKDVQDYIIKVVSDILESANISYVKWDMN RNMTEIGSALLPPERQRETAHRYILGLYRILEEITTRFPDVLFESCAGGGGRFDPGMLYYMPQTWTSDDTDAIERLKIQY GTSIVYPLISMGSHISAVPNHQVHRITPLKIRAHVAMSANFGFELDLTKLSSEEKDEIKKYVEKYKEIRKLVQFGDFYRL LSPFEGNETAWLIVSEDKREFLLYYFRVLGGANEPIKRLRLKGINPDFNYVLEDDGSEYSGDELMYAGKVIPELKGDFQS IMMHFKEESIKDG >Mature_732_residues SIHFNDKTKTFYLTAKDTSYVIYVLKNGAVLHAYFGKIIKTPNIYHLLKLPHISIDNDIINFGNQLMLDFLPQEYPAYGN TDFRSPAYQIQLENGSTVSDLRYLSHKIYKGKPKLEGLPATYVENEDEADTLELELYDKVANLKVTLIYTAFRDYDVITR SVRFENMGKEDIKLLRALSMNVDFNDSNFDMLQLSGAWARERHVIRRPLVPGAQSIESRRGASSHQQNPFIALLRNDADE WHGDVYGFSLVYSGNFLAQVEVDQYNMARVSMGINPFDFSWLLKPGETFQTPEVVMVYSDGGLNKMSNTYHKLYRNRLMR SKFKDRETPILINNWEATYFDFTEEKLKELAKEAKDLGIELFVLDDGWFGKRNSDNSSLGDWFVNKEKIPSGLDGLAKGI NSLGLKFGLWMEPEMVSPDSDLYREHPDWCIHVPNRSRSESRNQLVLDLSRKDVQDYIIKVVSDILESANISYVKWDMNR NMTEIGSALLPPERQRETAHRYILGLYRILEEITTRFPDVLFESCAGGGGRFDPGMLYYMPQTWTSDDTDAIERLKIQYG TSIVYPLISMGSHISAVPNHQVHRITPLKIRAHVAMSANFGFELDLTKLSSEEKDEIKKYVEKYKEIRKLVQFGDFYRLL SPFEGNETAWLIVSEDKREFLLYYFRVLGGANEPIKRLRLKGINPDFNYVLEDDGSEYSGDELMYAGKVIPELKGDFQSI MMHFKEESIKDG
Specific function: Alpha-galactosidase associated with the raffinose operon [H]
COG id: COG3345
COG function: function code G; Alpha-galactosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 36 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR002252 - InterPro: IPR017853 - InterPro: IPR000111 [H]
Pfam domain/function: PF02065 Melibiase [H]
EC number: =3.2.1.22 [H]
Molecular weight: Translated: 84539; Mature: 84408
Theoretical pI: Translated: 5.58; Mature: 5.58
Prosite motif: PS00512 ALPHA_GALACTOSIDASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIHFNDKTKTFYLTAKDTSYVIYVLKNGAVLHAYFGKIIKTPNIYHLLKLPHISIDNDI CEEEECCCCEEEEEEECCCEEEEEEEECCCEEEEHHHHHHCCCCEEEEEECCCCCCCCHH INFGNQLMLDFLPQEYPAYGNTDFRSPAYQIQLENGSTVSDLRYLSHKIYKGKPKLEGLP HHCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCC ATYVENEDEADTLELELYDKVANLKVTLIYTAFRDYDVITRSVRFENMGKEDIKLLRALS CHHCCCCCCCCEEEEEEEHHHHCEEEEEEEEEHHCHHHHHHHHHHCCCCHHHHHHHHHHH MNVDFNDSNFDMLQLSGAWARERHVIRRPLVPGAQSIESRRGASSHQQNPFIALLRNDAD CCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCH EWHGDVYGFSLVYSGNFLAQVEVDQYNMARVSMGINPFDFSWLLKPGETFQTPEVVMVYS HHCCCEEEEEEEEECCEEEEEEECCCCEEEEEECCCCCCCEEEECCCCCCCCCCEEEEEC DGGLNKMSNTYHKLYRNRLMRSKFKDRETPILINNWEATYFDFTEEKLKELAKEAKDLGI CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEECCCHHHHHHHHHHHHHCCE ELFVLDDGWFGKRNSDNSSLGDWFVNKEKIPSGLDGLAKGINSLGLKFGLWMEPEMVSPD EEEEEECCCCCCCCCCCCCCHHHCCCHHCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCC SDLYREHPDWCIHVPNRSRSESRNQLVLDLSRKDVQDYIIKVVSDILESANISYVKWDMN HHHHHCCCCEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECC RNMTEIGSALLPPERQRETAHRYILGLYRILEEITTRFPDVLFESCAGGGGRFDPGMLYY CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE MPQTWTSDDTDAIERLKIQYGTSIVYPLISMGSHISAVPNHQVHRITPLKIRAHVAMSAN ECCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEEECC FGFELDLTKLSSEEKDEIKKYVEKYKEIRKLVQFGDFYRLLSPFEGNETAWLIVSEDKRE CCEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHH FLLYYFRVLGGANEPIKRLRLKGINPDFNYVLEDDGSEYSGDELMYAGKVIPELKGDFQS HHHHHHHHHCCCCCCHHHHEECCCCCCCCEEECCCCCCCCCCCEEEECCCCHHHCCCHHH IMMHFKEESIKDG HHHHHHHHHCCCC >Mature Secondary Structure SIHFNDKTKTFYLTAKDTSYVIYVLKNGAVLHAYFGKIIKTPNIYHLLKLPHISIDNDI EEEECCCCEEEEEEECCCEEEEEEEECCCEEEEHHHHHHCCCCEEEEEECCCCCCCCHH INFGNQLMLDFLPQEYPAYGNTDFRSPAYQIQLENGSTVSDLRYLSHKIYKGKPKLEGLP HHCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCC ATYVENEDEADTLELELYDKVANLKVTLIYTAFRDYDVITRSVRFENMGKEDIKLLRALS CHHCCCCCCCCEEEEEEEHHHHCEEEEEEEEEHHCHHHHHHHHHHCCCCHHHHHHHHHHH MNVDFNDSNFDMLQLSGAWARERHVIRRPLVPGAQSIESRRGASSHQQNPFIALLRNDAD CCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCH EWHGDVYGFSLVYSGNFLAQVEVDQYNMARVSMGINPFDFSWLLKPGETFQTPEVVMVYS HHCCCEEEEEEEEECCEEEEEEECCCCEEEEEECCCCCCCEEEECCCCCCCCCCEEEEEC DGGLNKMSNTYHKLYRNRLMRSKFKDRETPILINNWEATYFDFTEEKLKELAKEAKDLGI CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEECCCHHHHHHHHHHHHHCCE ELFVLDDGWFGKRNSDNSSLGDWFVNKEKIPSGLDGLAKGINSLGLKFGLWMEPEMVSPD EEEEEECCCCCCCCCCCCCCHHHCCCHHCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCC SDLYREHPDWCIHVPNRSRSESRNQLVLDLSRKDVQDYIIKVVSDILESANISYVKWDMN HHHHHCCCCEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECC RNMTEIGSALLPPERQRETAHRYILGLYRILEEITTRFPDVLFESCAGGGGRFDPGMLYY CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE MPQTWTSDDTDAIERLKIQYGTSIVYPLISMGSHISAVPNHQVHRITPLKIRAHVAMSAN ECCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEEECC FGFELDLTKLSSEEKDEIKKYVEKYKEIRKLVQFGDFYRLLSPFEGNETAWLIVSEDKRE CCEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHH FLLYYFRVLGGANEPIKRLRLKGINPDFNYVLEDDGSEYSGDELMYAGKVIPELKGDFQS HHHHHHHHHCCCCCCHHHHEECCCCCCCCEEECCCCCCCCCCCEEEECCCCHHHCCCHHH IMMHFKEESIKDG HHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA