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The map label for this gene is amyC [H]

Identifier: 167039742

GI number: 167039742

Start: 1130108

End: 1130920

Strand: Direct

Name: amyC [H]

Synonym: Teth514_1093

Alternate gene names: 167039742

Gene position: 1130108-1130920 (Clockwise)

Preceding gene: 167039741

Following gene: 167039743

Centisome position: 45.99

GC content: 29.52

Gene sequence:

>813_bases
ATGAAAAATAATACATGGTATAAAACTATATTGGCGATACTAATTACTATAATACATCTTATTCCCATTTATATTGCTTT
AACAGTTTCTTTCAAAAATATAACAGATTTTTCATCTTATTGGACTTTACCCAAGCAATTATTTTTAGAAAATTATAAGG
TTGCATGGCAAAATGGTGGCATGCCCATTGCTTTTAAAAACACAATAATAATAACGGGGGTATCTTCCATATTGATTATA
TTAATATCCGCTATGGCTGCTTATCCACTTGCTCGCAATAATAGCAAATTCAATAATACCATCCTTACAATGATTTTATC
TGTAATGATGATTCCACCACTTAGTTTATTAGTTCCATTGTATGTATTAATGAGAAAAGTGGGAGCAATAAGTACCTATT
GGGGGATAGTATCAGTACATCTTGCTTTTCAATTACCATTAGCTATTTTTTTGTATACAAATTTTATACGTGCGTTACCA
AGGGAATTAGATGAAGCTGCTTTGATAGATGGATGTAGTATATTTACTATATTTTATAGAATAATTTTACCACTTTTAAA
ACCCGTTACTGTGACTGTTTTGATAATGACTGGATTGAATATATGGAACGATTATCAACTCTCATTATTTTTCTTACAAA
AACCTGAAATAAAAGTAATTACACTTACAATAGCAACATTTTTTGGAATATCAGGTGCAAATCCTAATGTTGCGGCAGCT
GCTGCGATTATGGCTGTTTTACCAGTTATAATAGTATATTTATTTTTACAAAAATACTTTATTCAAGGTATGGTTGAGAG
TGCAATAAAATAA

Upstream 100 bases:

>100_bases
GATATGCTGCGGCTATAGGAGTATTACTTTTTGTTTCGATATTGGTCTCTACAATTATATTGCAAATCTTTTTTAAGAAA
AAAGGTGGTGATTATATATT

Downstream 100 bases:

>100_bases
AGATATTTTTTTAAGGAGTTATGAGATGCTTTTGTTGAAATGAGAAAATTAAAGAAAAACTAAGATATTAAGAGAAAATA
AAAAATAATATAAGGAGGAC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MKNNTWYKTILAILITIIHLIPIYIALTVSFKNITDFSSYWTLPKQLFLENYKVAWQNGGMPIAFKNTIIITGVSSILII
LISAMAAYPLARNNSKFNNTILTMILSVMMIPPLSLLVPLYVLMRKVGAISTYWGIVSVHLAFQLPLAIFLYTNFIRALP
RELDEAALIDGCSIFTIFYRIILPLLKPVTVTVLIMTGLNIWNDYQLSLFFLQKPEIKVITLTIATFFGISGANPNVAAA
AAIMAVLPVIIVYLFLQKYFIQGMVESAIK

Sequences:

>Translated_270_residues
MKNNTWYKTILAILITIIHLIPIYIALTVSFKNITDFSSYWTLPKQLFLENYKVAWQNGGMPIAFKNTIIITGVSSILII
LISAMAAYPLARNNSKFNNTILTMILSVMMIPPLSLLVPLYVLMRKVGAISTYWGIVSVHLAFQLPLAIFLYTNFIRALP
RELDEAALIDGCSIFTIFYRIILPLLKPVTVTVLIMTGLNIWNDYQLSLFFLQKPEIKVITLTIATFFGISGANPNVAAA
AAIMAVLPVIIVYLFLQKYFIQGMVESAIK
>Mature_270_residues
MKNNTWYKTILAILITIIHLIPIYIALTVSFKNITDFSSYWTLPKQLFLENYKVAWQNGGMPIAFKNTIIITGVSSILII
LISAMAAYPLARNNSKFNNTILTMILSVMMIPPLSLLVPLYVLMRKVGAISTYWGIVSVHLAFQLPLAIFLYTNFIRALP
RELDEAALIDGCSIFTIFYRIILPLLKPVTVTVLIMTGLNIWNDYQLSLFFLQKPEIKVITLTIATFFGISGANPNVAAA
AAIMAVLPVIIVYLFLQKYFIQGMVESAIK

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=261, Percent_Identity=26.8199233716475, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1790464, Length=270, Percent_Identity=23.3333333333333, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789860, Length=287, Percent_Identity=25.4355400696864, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30290; Mature: 30290

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNNTWYKTILAILITIIHLIPIYIALTVSFKNITDFSSYWTLPKQLFLENYKVAWQNGG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHEEEECCC
MPIAFKNTIIITGVSSILIILISAMAAYPLARNNSKFNNTILTMILSVMMIPPLSLLVPL
EEEEEECEEEEECHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHH
YVLMRKVGAISTYWGIVSVHLAFQLPLAIFLYTNFIRALPRELDEAALIDGCSIFTIFYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
IILPLLKPVTVTVLIMTGLNIWNDYQLSLFFLQKPEIKVITLTIATFFGISGANPNVAAA
HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEEEHHHHHCCCCCCCCHHHH
AAIMAVLPVIIVYLFLQKYFIQGMVESAIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKNNTWYKTILAILITIIHLIPIYIALTVSFKNITDFSSYWTLPKQLFLENYKVAWQNGG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHEEEECCC
MPIAFKNTIIITGVSSILIILISAMAAYPLARNNSKFNNTILTMILSVMMIPPLSLLVPL
EEEEEECEEEEECHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHH
YVLMRKVGAISTYWGIVSVHLAFQLPLAIFLYTNFIRALPRELDEAALIDGCSIFTIFYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
IILPLLKPVTVTVLIMTGLNIWNDYQLSLFFLQKPEIKVITLTIATFFGISGANPNVAAA
HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEEEHHHHHCCCCCCCCHHHH
AAIMAVLPVIIVYLFLQKYFIQGMVESAIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]