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The map label for this gene is amyD [H]

Identifier: 167039741

GI number: 167039741

Start: 1129236

End: 1130111

Strand: Direct

Name: amyD [H]

Synonym: Teth514_1092

Alternate gene names: 167039741

Gene position: 1129236-1130111 (Clockwise)

Preceding gene: 167039740

Following gene: 167039742

Centisome position: 45.96

GC content: 31.74

Gene sequence:

>876_bases
TTGGAAAGGGAACTTAAACGTTCAAATATTATGTATATTCCTGCTATTATTTTCCTTGTAGTATTTATTGTTTATCCTTT
TTTAACCGGATTTAGGATTTCTTTTACGGACTGGGATGGTTATTCACAAACGTATCGCTATATAGGTATAGAAAATTTTA
AACTATTGTCTAGAGATCAAAATGTGCGAATAGCCTTTGTTAATACTTTGATTTATGGCTTTGGTAGTACTTTTTTTCAA
CAGATTTTGGGACTTGCATATGCTTTACTTTTGAATAAACCATTTAGAGGACGGACTTTAGCAAGAACTGCTGTTTATTT
GCAAGTTTTAATTTCACCAATTATAATGGGTTATATGTGGTACTTTATATTAAAATATGATCACGGAGCACTAAATGATT
TATTGGGTTTATTTGGCATAAAACCTGTATTATGGTTATCTGATCCTACAATTGCAGTATGGGTAATAGTAGTATTGAAT
ACTATCCAGTATGTAGGAGTTTCGATGGTAATATATCTTGCTGGTTTACAAGGAATACCTTCTATGTATTACGAAGCAGC
AGCTATTGATGGAGTAACTCTATGGCAAGAATTTAGACATATAACTTTACCTTTACTATATCCATCAATAGTTAGCAGTG
TTATTATAAATGTAATAGGAGGCTTAAAATTATTTGACATTATAAGAGCATTAACTGGTGGTGGACCAGGATACACAACC
CATTCACTGTCAACATTAATTTATACAACGTACTTCCAATCGCAATCAGCGGGATATGCTGCGGCTATAGGAGTATTACT
TTTTGTTTCGATATTGGTCTCTACAATTATATTGCAAATCTTTTTTAAGAAAAAAGGTGGTGATTATATATTATGA

Upstream 100 bases:

>100_bases
TCAATTATTACTACTCTACAAAGCATATATTTCTAATATATGCTTTGTAGAGATAAATGTTTTTATTTGTTAAAATGCTG
GATAAGGAGGAATTACCAAC

Downstream 100 bases:

>100_bases
AAAATAATACATGGTATAAAACTATATTGGCGATACTAATTACTATAATACATCTTATTCCCATTTATATTGCTTTAACA
GTTTCTTTCAAAAATATAAC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MERELKRSNIMYIPAIIFLVVFIVYPFLTGFRISFTDWDGYSQTYRYIGIENFKLLSRDQNVRIAFVNTLIYGFGSTFFQ
QILGLAYALLLNKPFRGRTLARTAVYLQVLISPIIMGYMWYFILKYDHGALNDLLGLFGIKPVLWLSDPTIAVWVIVVLN
TIQYVGVSMVIYLAGLQGIPSMYYEAAAIDGVTLWQEFRHITLPLLYPSIVSSVIINVIGGLKLFDIIRALTGGGPGYTT
HSLSTLIYTTYFQSQSAGYAAAIGVLLFVSILVSTIILQIFFKKKGGDYIL

Sequences:

>Translated_291_residues
MERELKRSNIMYIPAIIFLVVFIVYPFLTGFRISFTDWDGYSQTYRYIGIENFKLLSRDQNVRIAFVNTLIYGFGSTFFQ
QILGLAYALLLNKPFRGRTLARTAVYLQVLISPIIMGYMWYFILKYDHGALNDLLGLFGIKPVLWLSDPTIAVWVIVVLN
TIQYVGVSMVIYLAGLQGIPSMYYEAAAIDGVTLWQEFRHITLPLLYPSIVSSVIINVIGGLKLFDIIRALTGGGPGYTT
HSLSTLIYTTYFQSQSAGYAAAIGVLLFVSILVSTIILQIFFKKKGGDYIL
>Mature_291_residues
MERELKRSNIMYIPAIIFLVVFIVYPFLTGFRISFTDWDGYSQTYRYIGIENFKLLSRDQNVRIAFVNTLIYGFGSTFFQ
QILGLAYALLLNKPFRGRTLARTAVYLQVLISPIIMGYMWYFILKYDHGALNDLLGLFGIKPVLWLSDPTIAVWVIVVLN
TIQYVGVSMVIYLAGLQGIPSMYYEAAAIDGVTLWQEFRHITLPLLYPSIVSSVIINVIGGLKLFDIIRALTGGGPGYTT
HSLSTLIYTTYFQSQSAGYAAAIGVLLFVSILVSTIILQIFFKKKGGDYIL

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=254, Percent_Identity=28.740157480315, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790465, Length=247, Percent_Identity=30.3643724696356, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789861, Length=283, Percent_Identity=25.4416961130742, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32794; Mature: 32794

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERELKRSNIMYIPAIIFLVVFIVYPFLTGFRISFTDWDGYSQTYRYIGIENFKLLSRDQ
CCCCHHHCCEEHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHEECCCCCEEECCCC
NVRIAFVNTLIYGFGSTFFQQILGLAYALLLNKPFRGRTLARTAVYLQVLISPIIMGYMW
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
YFILKYDHGALNDLLGLFGIKPVLWLSDPTIAVWVIVVLNTIQYVGVSMVIYLAGLQGIP
HHHHHCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
SMYYEAAAIDGVTLWQEFRHITLPLLYPSIVSSVIINVIGGLKLFDIIRALTGGGPGYTT
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCH
HSLSTLIYTTYFQSQSAGYAAAIGVLLFVSILVSTIILQIFFKKKGGDYIL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MERELKRSNIMYIPAIIFLVVFIVYPFLTGFRISFTDWDGYSQTYRYIGIENFKLLSRDQ
CCCCHHHCCEEHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHEECCCCCEEECCCC
NVRIAFVNTLIYGFGSTFFQQILGLAYALLLNKPFRGRTLARTAVYLQVLISPIIMGYMW
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
YFILKYDHGALNDLLGLFGIKPVLWLSDPTIAVWVIVVLNTIQYVGVSMVIYLAGLQGIP
HHHHHCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
SMYYEAAAIDGVTLWQEFRHITLPLLYPSIVSSVIINVIGGLKLFDIIRALTGGGPGYTT
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCH
HSLSTLIYTTYFQSQSAGYAAAIGVLLFVSILVSTIILQIFFKKKGGDYIL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]