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The map label for this gene is yndD [H]

Identifier: 167039262

GI number: 167039262

Start: 625817

End: 627421

Strand: Direct

Name: yndD [H]

Synonym: Teth514_0603

Alternate gene names: 167039262

Gene position: 625817-627421 (Clockwise)

Preceding gene: 167039261

Following gene: 167039263

Centisome position: 25.47

GC content: 36.39

Gene sequence:

>1605_bases
ATGAGATTTTTTGATAAGATATTTGGCAAAAAAAACGATAAAAAGGAAGCGAAAAATGGTACACTAGCTTCAAATAGTCT
TAAGGTAAATTTAGATTATATAAAAAATAAATTAAAAGATTGTGATGATGTAATATATAGAGATATTTGGGTGGGGGAAA
ACCAGCAATATAATCTTGCAATTGTATTTATAGATGGGCTTGTAGACAAAGACCTCATAAATGACCATGTACTCCACTCT
TTGCTTTTGGATTCAAGACAAGCAGCCCCTTCTATTGAGAAGATAAAAGGTAATTTATATGAGGTTATAAAAAAAGGGAC
TATAACTGGAGGGGACATAAAACAGATTACAGACTTGGATAAATGTATTTTATCAATATTGAGTGGAGACACTGCATTAT
TGTTTGAAGGCTCACCTGAAATAGTCATTATTTCTAGTAAAGGTTGGCAAATGAGGTCAATTTCTTCTCCTGAAGCAGAG
ACAGTTATAAGAGGTCCCCGGGAAGGTTTTACTGAGACAATAAGGGTAAATACTGCCCTTGTAAGAAGACGGATAAGGGA
CCCTAATTTGAAAATAAAACAAATACAGATTGGGGAAAGAACTCATACAGACGTAGCAGTGCTTTATATCGAGGATATTG
TTGATAGAAATGTGTTGGATAAAGTGATGAAAAGACTTAAAAATATAAAAATAGATGGAGTGTTTGAAAGTGGATACATA
GAACAATTGATTGAAGAGGATTGGCATTCACCATTTCCTCAAGTTTTGAGCACAGAAAGGCCTGACAAGGTTGCGGCTTC
CCTTTTGGAGGGAAGAGTGGCAATTTTGACAGATAATACTCCTTTTGCTCTCATAATACCTACTACTCTCGCCACTCTTT
TTCAATCGCCTGAAGATTATTATGAAAGGTGGATGATATCTTCCCTTTTAAGAATTTTAAGGTTTCTTGCAGCAATTGTA
GCATTGGTTTCACCAGCAGTTTACATAGCTTTTACGGCTTATCATCCTGGCCTTATACCGACTAAATTAACTTTATATGT
TGCAGCAACACGACAAGGTATTCCCTTTCCTGCTTTTTTTGAAGCTTTAATTATGGAAGCGACTTTTGAGCTTTTAAGAG
AGGCGGGAGTTAGGCTTCCTGTACCTATAGGGCAAACTATTGGCATTGTGGGTGGTCTCATTATAGGGCAAGCTGCTGTC
GAAGCGGGTATTGTAAGTCCTCTCATGGTAATAGTAGTAGCTGTTACAGCTGTAGCTTCTTTTGCAATACCCAGTTACAG
CGCTGCCATTGCTTTTAGAATGCTTAGGTTTATATTTATGCTTCTTGCTGCTGTCTTTGGCTTATATGGCATAATGCTTG
GGTTTATGGTGGTTCTCACTCACTTGGTTGTTTTAAAAAGTTTTGGAGTTCCTTATCTTTCTCCATTTGTGGAAATAGAC
ATAAGCGACCTTGCGGATACTTTGATAAAGGCTCCTTTGATGTATTTTAAAAACAGGCCGGAGATTTTAGATACCCCTGA
TAGAAAAAAGATGAAGGATTTAAGAGAAGAAAAAATAGAAAGCATAGAAGATGATAGGAGAGACAACAATGATAAAAAAC
AATGA

Upstream 100 bases:

>100_bases
AGGGATGCTAAGCTGTGTAGGTGGATTGGATTGTTTTATGTTTTTATTGGGATAGTTGCTATTATTTTACGAACCTTTTT
TCCTATGTAAGGAGGAGAAT

Downstream 100 bases:

>100_bases
CAAAATCTCTGCGAATCAAGTTGCTATAATACTTTTTACTACCATGGTAGGAGCTGGAATATTAAGTCTTCCTGCAGATG
TTTCAAAAGAGGTAGGGCCT

Product: spore germination protein GerA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 534; Mature: 534

Protein sequence:

>534_residues
MRFFDKIFGKKNDKKEAKNGTLASNSLKVNLDYIKNKLKDCDDVIYRDIWVGENQQYNLAIVFIDGLVDKDLINDHVLHS
LLLDSRQAAPSIEKIKGNLYEVIKKGTITGGDIKQITDLDKCILSILSGDTALLFEGSPEIVIISSKGWQMRSISSPEAE
TVIRGPREGFTETIRVNTALVRRRIRDPNLKIKQIQIGERTHTDVAVLYIEDIVDRNVLDKVMKRLKNIKIDGVFESGYI
EQLIEEDWHSPFPQVLSTERPDKVAASLLEGRVAILTDNTPFALIIPTTLATLFQSPEDYYERWMISSLLRILRFLAAIV
ALVSPAVYIAFTAYHPGLIPTKLTLYVAATRQGIPFPAFFEALIMEATFELLREAGVRLPVPIGQTIGIVGGLIIGQAAV
EAGIVSPLMVIVVAVTAVASFAIPSYSAAIAFRMLRFIFMLLAAVFGLYGIMLGFMVVLTHLVVLKSFGVPYLSPFVEID
ISDLADTLIKAPLMYFKNRPEILDTPDRKKMKDLREEKIESIEDDRRDNNDKKQ

Sequences:

>Translated_534_residues
MRFFDKIFGKKNDKKEAKNGTLASNSLKVNLDYIKNKLKDCDDVIYRDIWVGENQQYNLAIVFIDGLVDKDLINDHVLHS
LLLDSRQAAPSIEKIKGNLYEVIKKGTITGGDIKQITDLDKCILSILSGDTALLFEGSPEIVIISSKGWQMRSISSPEAE
TVIRGPREGFTETIRVNTALVRRRIRDPNLKIKQIQIGERTHTDVAVLYIEDIVDRNVLDKVMKRLKNIKIDGVFESGYI
EQLIEEDWHSPFPQVLSTERPDKVAASLLEGRVAILTDNTPFALIIPTTLATLFQSPEDYYERWMISSLLRILRFLAAIV
ALVSPAVYIAFTAYHPGLIPTKLTLYVAATRQGIPFPAFFEALIMEATFELLREAGVRLPVPIGQTIGIVGGLIIGQAAV
EAGIVSPLMVIVVAVTAVASFAIPSYSAAIAFRMLRFIFMLLAAVFGLYGIMLGFMVVLTHLVVLKSFGVPYLSPFVEID
ISDLADTLIKAPLMYFKNRPEILDTPDRKKMKDLREEKIESIEDDRRDNNDKKQ
>Mature_534_residues
MRFFDKIFGKKNDKKEAKNGTLASNSLKVNLDYIKNKLKDCDDVIYRDIWVGENQQYNLAIVFIDGLVDKDLINDHVLHS
LLLDSRQAAPSIEKIKGNLYEVIKKGTITGGDIKQITDLDKCILSILSGDTALLFEGSPEIVIISSKGWQMRSISSPEAE
TVIRGPREGFTETIRVNTALVRRRIRDPNLKIKQIQIGERTHTDVAVLYIEDIVDRNVLDKVMKRLKNIKIDGVFESGYI
EQLIEEDWHSPFPQVLSTERPDKVAASLLEGRVAILTDNTPFALIIPTTLATLFQSPEDYYERWMISSLLRILRFLAAIV
ALVSPAVYIAFTAYHPGLIPTKLTLYVAATRQGIPFPAFFEALIMEATFELLREAGVRLPVPIGQTIGIVGGLIIGQAAV
EAGIVSPLMVIVVAVTAVASFAIPSYSAAIAFRMLRFIFMLLAAVFGLYGIMLGFMVVLTHLVVLKSFGVPYLSPFVEID
ISDLADTLIKAPLMYFKNRPEILDTPDRKKMKDLREEKIESIEDDRRDNNDKKQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 59818; Mature: 59818

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFFDKIFGKKNDKKEAKNGTLASNSLKVNLDYIKNKLKDCDDVIYRDIWVGENQQYNLA
CCHHHHHHCCCCCHHHHCCCCEECCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
IVFIDGLVDKDLINDHVLHSLLLDSRQAAPSIEKIKGNLYEVIKKGTITGGDIKQITDLD
EEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
KCILSILSGDTALLFEGSPEIVIISSKGWQMRSISSPEAETVIRGPREGFTETIRVNTAL
HHHHHHHCCCEEEEECCCCCEEEECCCCCEECCCCCCCHHHHHCCCCCCCHHHHHHHHHH
VRRRIRDPNLKIKQIQIGERTHTDVAVLYIEDIVDRNVLDKVMKRLKNIKIDGVFESGYI
HHHHHCCCCCEEEEEEECCCCCCCEEEEHHHHHHCHHHHHHHHHHHHCCEEEEEECCHHH
EQLIEEDWHSPFPQVLSTERPDKVAASLLEGRVAILTDNTPFALIIPTTLATLFQSPEDY
HHHHHHHCCCCCHHHHCCCCCHHHHHHHHCCCEEEEECCCCEEEEHHHHHHHHHCCHHHH
YERWMISSLLRILRFLAAIVALVSPAVYIAFTAYHPGLIPTKLTLYVAATRQGIPFPAFF
HHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCCCCCEEEEEEECCCCCCCHHHH
EALIMEATFELLREAGVRLPVPIGQTIGIVGGLIIGQAAVEAGIVSPLMVIVVAVTAVAS
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAIPSYSAAIAFRMLRFIFMLLAAVFGLYGIMLGFMVVLTHLVVLKSFGVPYLSPFVEID
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCHHHEEE
ISDLADTLIKAPLMYFKNRPEILDTPDRKKMKDLREEKIESIEDDRRDNNDKKQ
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRFFDKIFGKKNDKKEAKNGTLASNSLKVNLDYIKNKLKDCDDVIYRDIWVGENQQYNLA
CCHHHHHHCCCCCHHHHCCCCEECCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
IVFIDGLVDKDLINDHVLHSLLLDSRQAAPSIEKIKGNLYEVIKKGTITGGDIKQITDLD
EEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
KCILSILSGDTALLFEGSPEIVIISSKGWQMRSISSPEAETVIRGPREGFTETIRVNTAL
HHHHHHHCCCEEEEECCCCCEEEECCCCCEECCCCCCCHHHHHCCCCCCCHHHHHHHHHH
VRRRIRDPNLKIKQIQIGERTHTDVAVLYIEDIVDRNVLDKVMKRLKNIKIDGVFESGYI
HHHHHCCCCCEEEEEEECCCCCCCEEEEHHHHHHCHHHHHHHHHHHHCCEEEEEECCHHH
EQLIEEDWHSPFPQVLSTERPDKVAASLLEGRVAILTDNTPFALIIPTTLATLFQSPEDY
HHHHHHHCCCCCHHHHCCCCCHHHHHHHHCCCEEEEECCCCEEEEHHHHHHHHHCCHHHH
YERWMISSLLRILRFLAAIVALVSPAVYIAFTAYHPGLIPTKLTLYVAATRQGIPFPAFF
HHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCCCCCEEEEEEECCCCCCCHHHH
EALIMEATFELLREAGVRLPVPIGQTIGIVGGLIIGQAAVEAGIVSPLMVIVVAVTAVAS
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAIPSYSAAIAFRMLRFIFMLLAAVFGLYGIMLGFMVVLTHLVVLKSFGVPYLSPFVEID
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCHHHEEE
ISDLADTLIKAPLMYFKNRPEILDTPDRKKMKDLREEKIESIEDDRRDNNDKKQ
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]