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The map label for this gene is yndE [H]

Identifier: 167039263

GI number: 167039263

Start: 627405

End: 628514

Strand: Direct

Name: yndE [H]

Synonym: Teth514_0604

Alternate gene names: 167039263

Gene position: 627405-628514 (Clockwise)

Preceding gene: 167039262

Following gene: 167039264

Centisome position: 25.53

GC content: 31.17

Gene sequence:

>1110_bases
ATGATAAAAAACAATGACAAAATCTCTGCGAATCAAGTTGCTATAATACTTTTTACTACCATGGTAGGAGCTGGAATATT
AAGTCTTCCTGCAGATGTTTCAAAAGAGGTAGGGCCTAATGGGCTTATAGCTATCTTAGGAGGAGGAATTGCTTCTCTTT
TTTTTGCAAGGCTGATACTTTATTTATCTTCTAAATTTCCTACAGAAACTTTTGTTGAATATGCCGGTAAACTTATAACA
AGACCTATTTCTATTGTTATAAGTGCTGTGCTGGTGTTTTACTTTGTAATGTTTGTAAGCCTTGATGCAAGAATTTTTGG
GGAAGTTTTAAAAATATATCTGTTACCTAGTACTCCTATTGAAATTATAATTCTTACTATGCTTTTTAGTTCTGCTTATT
TGGTAAGATATGGACTTGAACCAATTGCACGAATGTCAGAAATTTTGTTTCCTATAATGGTGATACCTCTTGTATTACTT
TTTTTGCCGGCTTTAACTGATGTAGACTTAAGCAATTTTCTTCCGTTTATGAGAGTTTCATTAATTAAGTTTTTTAAAGG
AATGCTTATGACTACATATAGTTTTGTTGGTTTTGAGATATTGTACTTGCTTTTTCCATATGTAATTGATAGGGACAAAT
TAAAAAGAAGTGTCAATTCAGCAATGTTTTCTACGATGTTGTTTTACATGTATATAACTTTTTTTGTAATCGGCATATTT
GGATACAAGGAAACAAGGGAACAGTTGTGGCCTTTTTTGACCCTCATTAAATCGATTAATTTTCCTGTGTTTTTCATTGA
AAATGTAGAGGGAATTATAATGGGAATATGGACATTCACCATTTTTACTACCATTTATTCTTTTCACTATTTTGCCACTT
TGATTCTTTCAAAACTTTTAAAGGCAAGAGAACATTCTTATTTTGTATTGCCGGCAGTTCCAATAATATATTTGATATCC
TTAATCCCTGATTCTATTGTGACAGTTTATAAATATGCGGGTTATGTTTCCCAGTACATGTCAGTGTTTTTTATTGCTAT
ATTGCCAATACTGCTGTATATCATTTTAAAAGTTAAAAGATTAGGTGGTAAAGATGAAGAGAAAACTTAA

Upstream 100 bases:

>100_bases
AAAAACAGGCCGGAGATTTTAGATACCCCTGATAGAAAAAAGATGAAGGATTTAAGAGAAGAAAAAATAGAAAGCATAGA
AGATGATAGGAGAGACAACA

Downstream 100 bases:

>100_bases
AATAGTGATATTATGGGTTTTAATTGCTCTCATGTTGACAGGCTGTTGGGATAAAATTGAAATAGAAGATAGAGCTTTTG
TGATGGCAATTGGCATAGAT

Product: spore germination protein

Products: Proton [Cytoplasm]; 4-aminobutyrate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MIKNNDKISANQVAIILFTTMVGAGILSLPADVSKEVGPNGLIAILGGGIASLFFARLILYLSSKFPTETFVEYAGKLIT
RPISIVISAVLVFYFVMFVSLDARIFGEVLKIYLLPSTPIEIIILTMLFSSAYLVRYGLEPIARMSEILFPIMVIPLVLL
FLPALTDVDLSNFLPFMRVSLIKFFKGMLMTTYSFVGFEILYLLFPYVIDRDKLKRSVNSAMFSTMLFYMYITFFVIGIF
GYKETREQLWPFLTLIKSINFPVFFIENVEGIIMGIWTFTIFTTIYSFHYFATLILSKLLKAREHSYFVLPAVPIIYLIS
LIPDSIVTVYKYAGYVSQYMSVFFIAILPILLYIILKVKRLGGKDEEKT

Sequences:

>Translated_369_residues
MIKNNDKISANQVAIILFTTMVGAGILSLPADVSKEVGPNGLIAILGGGIASLFFARLILYLSSKFPTETFVEYAGKLIT
RPISIVISAVLVFYFVMFVSLDARIFGEVLKIYLLPSTPIEIIILTMLFSSAYLVRYGLEPIARMSEILFPIMVIPLVLL
FLPALTDVDLSNFLPFMRVSLIKFFKGMLMTTYSFVGFEILYLLFPYVIDRDKLKRSVNSAMFSTMLFYMYITFFVIGIF
GYKETREQLWPFLTLIKSINFPVFFIENVEGIIMGIWTFTIFTTIYSFHYFATLILSKLLKAREHSYFVLPAVPIIYLIS
LIPDSIVTVYKYAGYVSQYMSVFFIAILPILLYIILKVKRLGGKDEEKT
>Mature_369_residues
MIKNNDKISANQVAIILFTTMVGAGILSLPADVSKEVGPNGLIAILGGGIASLFFARLILYLSSKFPTETFVEYAGKLIT
RPISIVISAVLVFYFVMFVSLDARIFGEVLKIYLLPSTPIEIIILTMLFSSAYLVRYGLEPIARMSEILFPIMVIPLVLL
FLPALTDVDLSNFLPFMRVSLIKFFKGMLMTTYSFVGFEILYLLFPYVIDRDKLKRSVNSAMFSTMLFYMYITFFVIGIF
GYKETREQLWPFLTLIKSINFPVFFIENVEGIIMGIWTFTIFTTIYSFHYFATLILSKLLKAREHSYFVLPAVPIIYLIS
LIPDSIVTVYKYAGYVSQYMSVFFIAILPILLYIILKVKRLGGKDEEKT

Specific function: Involved in the germinative response to L-alanine. Could be an amino acid transporter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily. Spore germination protein (SGP) (TC 2.A.3.9) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002293
- InterPro:   IPR004761 [H]

Pfam domain/function: PF03845 Spore_permease [H]

EC number: NA

Molecular weight: Translated: 42011; Mature: 42011

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCC
>Mature Secondary Structure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CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; 4-aminobutyrate [Periplasm] [C]

Specific reaction: Proton [Periplasm] + 4-aminobutyrate [Periplasm] = Proton [Cytoplasm] + 4-aminobutyrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]