Click here to switch to the map view.

The map label for this gene is ydhC [H]

Identifier: 167039259

GI number: 167039259

Start: 624115

End: 624792

Strand: Direct

Name: ydhC [H]

Synonym: Teth514_0600

Alternate gene names: 167039259

Gene position: 624115-624792 (Clockwise)

Preceding gene: 167039258

Following gene: 167039260

Centisome position: 25.4

GC content: 33.48

Gene sequence:

>678_bases
ATGAATGAGTTTTTTCCATTGGAAAATTACAAACCGTTAAGAGATGTAGTTTTTGATTACATGAAAGATGCCATAATTAC
AGGTAAATTAAGACCTGGAGAGAGACTTATGGAAGTTCAATTGGCAGAAAAACTGGGAGTAAGTCGGACGCCAGTTAGAG
AAGCGATTAGAAAATTGGAACTTGAAGGGCTAGTTGTTATGATTCCTCGAAAAGGAGCTTATGTGGCAGATTTGGATGCA
AAGGACCTTTTGAATGTTTTAGAAGTAAGAAGTTCGTTAGAAGGATTAGCTGCTTCCCTAGCTGCTGAAAGAATAACGGA
GGAGGAAATTGATAAATTAAAAAAAATTATAGAAGAATTTCAAAAAAAAATAGAAGAAGGTGATAATGAAGGGCTAGTAA
AATTGGACAAGGAGTTTCATGATTTAATTTTTACTGCTTCACGAAATGACAAATTAATTCAAATAATGAATAATTTACAA
GAACATGTACACAGATTTAGAGTCAGATATATAAATGAAGAGAAAAAAGCGAAAAAAATACATCAAGAACATAAAAAAAT
TACAGAGGCTATCGAAGCAAGAGATACGGATGCTGCACGAAAATGGGCAGAGAAACACATACGCAATTTCCAGACAGAGG
TTGTAAAAGACATAAAGTATTTTAGTTACAAGGAGTGA

Upstream 100 bases:

>100_bases
TTTGACGATTTACAAAAGCTTATAAAAGCCTATAAAAATTTAGAAGGAATTTACAGTTTTGTATTTTTTTCAAAAACTAT
AGATAAGGGGTTAGAATTGT

Downstream 100 bases:

>100_bases
GTTAGGTGAATGCCATAATTTTGGCCGGCAGTACTAAAGAGGATAAGTTGCCTGATAAAGCCTTTATAGAAATAAAAGGG
AAATATATGATCTCTTATGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MNEFFPLENYKPLRDVVFDYMKDAIITGKLRPGERLMEVQLAEKLGVSRTPVREAIRKLELEGLVVMIPRKGAYVADLDA
KDLLNVLEVRSSLEGLAASLAAERITEEEIDKLKKIIEEFQKKIEEGDNEGLVKLDKEFHDLIFTASRNDKLIQIMNNLQ
EHVHRFRVRYINEEKKAKKIHQEHKKITEAIEARDTDAARKWAEKHIRNFQTEVVKDIKYFSYKE

Sequences:

>Translated_225_residues
MNEFFPLENYKPLRDVVFDYMKDAIITGKLRPGERLMEVQLAEKLGVSRTPVREAIRKLELEGLVVMIPRKGAYVADLDA
KDLLNVLEVRSSLEGLAASLAAERITEEEIDKLKKIIEEFQKKIEEGDNEGLVKLDKEFHDLIFTASRNDKLIQIMNNLQ
EHVHRFRVRYINEEKKAKKIHQEHKKITEAIEARDTDAARKWAEKHIRNFQTEVVKDIKYFSYKE
>Mature_225_residues
MNEFFPLENYKPLRDVVFDYMKDAIITGKLRPGERLMEVQLAEKLGVSRTPVREAIRKLELEGLVVMIPRKGAYVADLDA
KDLLNVLEVRSSLEGLAASLAAERITEEEIDKLKKIIEEFQKKIEEGDNEGLVKLDKEFHDLIFTASRNDKLIQIMNNLQ
EHVHRFRVRYINEEKKAKKIHQEHKKITEAIEARDTDAARKWAEKHIRNFQTEVVKDIKYFSYKE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=213, Percent_Identity=26.2910798122066, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87081914, Length=139, Percent_Identity=30.9352517985612, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87082149, Length=200, Percent_Identity=28, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1789353, Length=222, Percent_Identity=27.027027027027, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI48994955, Length=200, Percent_Identity=28, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI48994961, Length=223, Percent_Identity=27.3542600896861, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790780, Length=234, Percent_Identity=28.6324786324786, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786303, Length=226, Percent_Identity=26.1061946902655, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1790032, Length=229, Percent_Identity=30.1310043668122, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26364; Mature: 26364

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEFFPLENYKPLRDVVFDYMKDAIITGKLRPGERLMEVQLAEKLGVSRTPVREAIRKLE
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LEGLVVMIPRKGAYVADLDAKDLLNVLEVRSSLEGLAASLAAERITEEEIDKLKKIIEEF
HCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
QKKIEEGDNEGLVKLDKEFHDLIFTASRNDKLIQIMNNLQEHVHRFRVRYINEEKKAKKI
HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
HQEHKKITEAIEARDTDAARKWAEKHIRNFQTEVVKDIKYFSYKE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNEFFPLENYKPLRDVVFDYMKDAIITGKLRPGERLMEVQLAEKLGVSRTPVREAIRKLE
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LEGLVVMIPRKGAYVADLDAKDLLNVLEVRSSLEGLAASLAAERITEEEIDKLKKIIEEF
HCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
QKKIEEGDNEGLVKLDKEFHDLIFTASRNDKLIQIMNNLQEHVHRFRVRYINEEKKAKKI
HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
HQEHKKITEAIEARDTDAARKWAEKHIRNFQTEVVKDIKYFSYKE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]