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The map label for this gene is dppB [H]

Identifier: 167039206

GI number: 167039206

Start: 567736

End: 568656

Strand: Direct

Name: dppB [H]

Synonym: Teth514_0547

Alternate gene names: 167039206

Gene position: 567736-568656 (Clockwise)

Preceding gene: 167039205

Following gene: 167039207

Centisome position: 23.1

GC content: 37.57

Gene sequence:

>921_bases
ATGGCCCGCTATATACTAAATAGATTAGTGGTTTCTTTAATTACTGCATGGTTCCTTGTAACTATAGTATTTTTCCTCGT
AAGGCTCCTTCCAGGAGATCCATTTTTGAGTGAAAAAGTTACTCCGGAGATTAAGCAAAACATGATGGAATACTATGGTT
TTGATAAACCGCTTCACGTCCAGTATATAACCTACATTTCAAACCTTTTAAAAGGCGATCTGGGATATTCCTTAAGGTAT
AGAAATAGAACGGTAAATGAAGTCATAGCACAGGCATTTCCTTATTCTGCCGATCTCGGGATAAGAGCTGTAATTTTCGC
TACAATTGTAGGTATTTCTTTGGGAATAATTGCAGCTTTAAATCGCAATAAACCCCTGGATTATCTCAGTATGTTTATTG
CTATCGTGGGTGTCTCTGTTCCCGGCTTTGTGATAGGGCCTCTTCTACAATATATTTTTTCTATCAAATTGAAACTCTTA
CCTGTAGCTCAATGGAAGGGTTTTGCATACACAATAATGCCGACTTTTGCTTTAAGCCTGGGTTCCATTGCACTAATGGC
AAGGCTTATGAGGGCAAGTATGCTCGATGTAGTCAATCAGGACTATATTAAGACTGCGAAATCAAAAGGCCTTTCACCAT
CACAAATAGTATGGAGACATCAAATAAGAAATGCTATTTTGCCGGTAATTACAGTCCTTGGACCTGTAACAGCTACACTT
CTCACCGGTACATTTGTTATAGAGCAAATTTTTGCAATCCCTGGACTTGGAAAATTCTACATTTTAGGCATTCAAAACTT
AGACTATTCGATGGTACTTGGAATGACAGTATTTTATGGTCTATTCTTAATTGCAGCAAACTTTATAGTTGACATTATAT
ACGGTTTTATAGACCCGAGAATCAGGATTGCAGGGAAATAG

Upstream 100 bases:

>100_bases
TGGTTCATGAGGGAGGTATATGTAAAAGCATATACCTCCATTTATGCTAATTTGAAAACAATAAAGTATTATTGGAAAAC
CGTAAAAAGGAGGTAAGTAA

Downstream 100 bases:

>100_bases
GAGGTAAAAAGATGATGCAGAACAGTGCGGGAGAACTTTCTCAGGAACTTTTTACTCATGTAGGCAAAAATATAAGTGAA
ATGGAGGCTATAGCAAGGCC

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MARYILNRLVVSLITAWFLVTIVFFLVRLLPGDPFLSEKVTPEIKQNMMEYYGFDKPLHVQYITYISNLLKGDLGYSLRY
RNRTVNEVIAQAFPYSADLGIRAVIFATIVGISLGIIAALNRNKPLDYLSMFIAIVGVSVPGFVIGPLLQYIFSIKLKLL
PVAQWKGFAYTIMPTFALSLGSIALMARLMRASMLDVVNQDYIKTAKSKGLSPSQIVWRHQIRNAILPVITVLGPVTATL
LTGTFVIEQIFAIPGLGKFYILGIQNLDYSMVLGMTVFYGLFLIAANFIVDIIYGFIDPRIRIAGK

Sequences:

>Translated_306_residues
MARYILNRLVVSLITAWFLVTIVFFLVRLLPGDPFLSEKVTPEIKQNMMEYYGFDKPLHVQYITYISNLLKGDLGYSLRY
RNRTVNEVIAQAFPYSADLGIRAVIFATIVGISLGIIAALNRNKPLDYLSMFIAIVGVSVPGFVIGPLLQYIFSIKLKLL
PVAQWKGFAYTIMPTFALSLGSIALMARLMRASMLDVVNQDYIKTAKSKGLSPSQIVWRHQIRNAILPVITVLGPVTATL
LTGTFVIEQIFAIPGLGKFYILGIQNLDYSMVLGMTVFYGLFLIAANFIVDIIYGFIDPRIRIAGK
>Mature_305_residues
ARYILNRLVVSLITAWFLVTIVFFLVRLLPGDPFLSEKVTPEIKQNMMEYYGFDKPLHVQYITYISNLLKGDLGYSLRYR
NRTVNEVIAQAFPYSADLGIRAVIFATIVGISLGIIAALNRNKPLDYLSMFIAIVGVSVPGFVIGPLLQYIFSIKLKLLP
VAQWKGFAYTIMPTFALSLGSIALMARLMRASMLDVVNQDYIKTAKSKGLSPSQIVWRHQIRNAILPVITVLGPVTATLL
TGTFVIEQIFAIPGLGKFYILGIQNLDYSMVLGMTVFYGLFLIAANFIVDIIYGFIDPRIRIAGK

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=305, Percent_Identity=42.6229508196721, Blast_Score=261, Evalue=5e-71,
Organism=Escherichia coli, GI1787053, Length=306, Percent_Identity=37.5816993464052, Blast_Score=207, Evalue=6e-55,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=33.8278931750742, Blast_Score=194, Evalue=4e-51,
Organism=Escherichia coli, GI1789888, Length=308, Percent_Identity=35.0649350649351, Blast_Score=185, Evalue=4e-48,
Organism=Escherichia coli, GI1787761, Length=319, Percent_Identity=33.8557993730408, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1788504, Length=370, Percent_Identity=27.8378378378378, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787550, Length=269, Percent_Identity=31.2267657992565, Blast_Score=123, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34191; Mature: 34059

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARYILNRLVVSLITAWFLVTIVFFLVRLLPGDPFLSEKVTPEIKQNMMEYYGFDKPLHV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHH
QYITYISNLLKGDLGYSLRYRNRTVNEVIAQAFPYSADLGIRAVIFATIVGISLGIIAAL
HHHHHHHHHHHCCCCCEEHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
NRNKPLDYLSMFIAIVGVSVPGFVIGPLLQYIFSIKLKLLPVAQWKGFAYTIMPTFALSL
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEHHHCCCEEHHHHHHHHHH
GSIALMARLMRASMLDVVNQDYIKTAKSKGLSPSQIVWRHQIRNAILPVITVLGPVTATL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTGTFVIEQIFAIPGLGKFYILGIQNLDYSMVLGMTVFYGLFLIAANFIVDIIYGFIDPR
HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IRIAGK
EEECCC
>Mature Secondary Structure 
ARYILNRLVVSLITAWFLVTIVFFLVRLLPGDPFLSEKVTPEIKQNMMEYYGFDKPLHV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHH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EEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]