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The map label for this gene is cmpR [H]

Identifier: 167038952

GI number: 167038952

Start: 303665

End: 304549

Strand: Reverse

Name: cmpR [H]

Synonym: Teth514_0284

Alternate gene names: 167038952

Gene position: 304549-303665 (Counterclockwise)

Preceding gene: 167038959

Following gene: 167038947

Centisome position: 12.39

GC content: 43.5

Gene sequence:

>885_bases
ATGACCCTTAGGGATATAGAAATCTTCGTAACCGTTTGCGAGTTAAAGAGCATGTCTGCTGCCGCTAAAAAGCTCTATAT
GTCCCAGCCCGCCATCAGCCAGGCCATATCGCAGATGGAGGGAGATCTCCAGGTCAGACTTTTTGACAGGATAGGCAGGA
AGCTTAGCCTCACGTATGCAGGGGAAATCCTGTATAGTTACGGAAAGCGGATACTCAATCTTGTCAAGGAAGCAGAGAGT
ACTCTTGATGATGTGAGGAACATGAGGATGGGAAGGCTGAGAGTGGGAACCAGTACAACGGTGGGAATTTACCTGCTCCC
GGAGATAATCGGCGAGTTCAGGAAAAAGTTCAGTATCGACGTCTACTTTACAATTGGCAACACAGCAGGGATAGAAAAGC
TGATATTTGACAATTCTATAGACCTTGGTATTGTCGAAGGTCCGGTCCATTCAAGGGACATTGTTGTAACACCCTATATA
GATGATGAGCTATATCTTGTATGTTCAAAAAGCCACAGGTGGGCAGAGAAAAAAAGCATCAGCCCCGCAGAGATTGAAAA
TGAGGATATAATCATGCGAGAAAAGGGAAGCGGGACGAGGGAGGTCTTTGAGGAGACCATGGCGAGAAATAATGTGAGGT
ACAGAATAAAATACGTTCTTAACAATACGGAGGCCATAAAAAAGGCCGTCGAAGCCAATATAGGCGTTTCGGTCATATCC
AGGCTGGCCGTAAAAAAGGAGATAAGAGGCGGCAGGCTCGTGAAAGTTGACATTGAAAATATAAGATTTGAAAGGAAGTT
TAGCATCATTTATCATAAAGATAAGTTCAAATCAAATCTGTTCGAAGAGTTTATAAGACACCTTTATAATTACAGTATAA
GGTAG

Upstream 100 bases:

>100_bases
AAGGTTGAAGAGTGCCGAATTTCTTCCTTTTATCTTTTCATTAGTAAAGTAATATGATATTATGAAAATGATAATTTTGT
AGTTATATGAGGTGGCCGTT

Downstream 100 bases:

>100_bases
CGCCGCGAGGCACAACCCGCGGCCACAAACCGATTAAAATACACCCATCAGCTTCAACATTTTGACGACAGGACCTCCGC
AAAAAACAGAGATAAAATAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MTLRDIEIFVTVCELKSMSAAAKKLYMSQPAISQAISQMEGDLQVRLFDRIGRKLSLTYAGEILYSYGKRILNLVKEAES
TLDDVRNMRMGRLRVGTSTTVGIYLLPEIIGEFRKKFSIDVYFTIGNTAGIEKLIFDNSIDLGIVEGPVHSRDIVVTPYI
DDELYLVCSKSHRWAEKKSISPAEIENEDIIMREKGSGTREVFEETMARNNVRYRIKYVLNNTEAIKKAVEANIGVSVIS
RLAVKKEIRGGRLVKVDIENIRFERKFSIIYHKDKFKSNLFEEFIRHLYNYSIR

Sequences:

>Translated_294_residues
MTLRDIEIFVTVCELKSMSAAAKKLYMSQPAISQAISQMEGDLQVRLFDRIGRKLSLTYAGEILYSYGKRILNLVKEAES
TLDDVRNMRMGRLRVGTSTTVGIYLLPEIIGEFRKKFSIDVYFTIGNTAGIEKLIFDNSIDLGIVEGPVHSRDIVVTPYI
DDELYLVCSKSHRWAEKKSISPAEIENEDIIMREKGSGTREVFEETMARNNVRYRIKYVLNNTEAIKKAVEANIGVSVIS
RLAVKKEIRGGRLVKVDIENIRFERKFSIIYHKDKFKSNLFEEFIRHLYNYSIR
>Mature_293_residues
TLRDIEIFVTVCELKSMSAAAKKLYMSQPAISQAISQMEGDLQVRLFDRIGRKLSLTYAGEILYSYGKRILNLVKEAEST
LDDVRNMRMGRLRVGTSTTVGIYLLPEIIGEFRKKFSIDVYFTIGNTAGIEKLIFDNSIDLGIVEGPVHSRDIVVTPYID
DELYLVCSKSHRWAEKKSISPAEIENEDIIMREKGSGTREVFEETMARNNVRYRIKYVLNNTEAIKKAVEANIGVSVISR
LAVKKEIRGGRLVKVDIENIRFERKFSIIYHKDKFKSNLFEEFIRHLYNYSIR

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions. Specifically binds to the cmpR- cmpA intergenic region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=286, Percent_Identity=31.1188811188811, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI157672245, Length=287, Percent_Identity=25.7839721254355, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1788748, Length=288, Percent_Identity=26.7361111111111, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI145693105, Length=292, Percent_Identity=28.4246575342466, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1790399, Length=277, Percent_Identity=25.9927797833935, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=26.6891891891892, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787530, Length=281, Percent_Identity=24.5551601423488, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI87082132, Length=265, Percent_Identity=27.1698113207547, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789639, Length=274, Percent_Identity=27.3722627737226, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1790262, Length=278, Percent_Identity=23.7410071942446, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1789204, Length=288, Percent_Identity=23.6111111111111, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787879, Length=293, Percent_Identity=23.5494880546075, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788297, Length=253, Percent_Identity=21.3438735177866, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788887, Length=246, Percent_Identity=26.0162601626016, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790783, Length=265, Percent_Identity=24.1509433962264, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1790208, Length=302, Percent_Identity=23.1788079470199, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788296, Length=227, Percent_Identity=24.2290748898678, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787806, Length=242, Percent_Identity=21.900826446281, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87081904, Length=114, Percent_Identity=30.7017543859649, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790011, Length=274, Percent_Identity=22.992700729927, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=24.4827586206897, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787128, Length=296, Percent_Identity=25.6756756756757, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=182, Percent_Identity=24.1758241758242, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33827; Mature: 33696

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLRDIEIFVTVCELKSMSAAAKKLYMSQPAISQAISQMEGDLQVRLFDRIGRKLSLTYA
CCCCCEEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEHHHCCCEEEEHHH
GEILYSYGKRILNLVKEAESTLDDVRNMRMGRLRVGTSTTVGIYLLPEIIGEFRKKFSID
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEHHEEHHHHHHHHHHHEEEE
VYFTIGNTAGIEKLIFDNSIDLGIVEGPVHSRDIVVTPYIDDELYLVCSKSHRWAEKKSI
EEEEECCCCCHHHHHCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEECCCCCHHHHCCC
SPAEIENEDIIMREKGSGTREVFEETMARNNVRYRIKYVLNNTEAIKKAVEANIGVSVIS
CCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHCCCCHHHHH
RLAVKKEIRGGRLVKVDIENIRFERKFSIIYHKDKFKSNLFEEFIRHLYNYSIR
HHHHHHHCCCCEEEEEEHHHCEEEEEEEEEEECHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TLRDIEIFVTVCELKSMSAAAKKLYMSQPAISQAISQMEGDLQVRLFDRIGRKLSLTYA
CCCCEEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEHHHCCCEEEEHHH
GEILYSYGKRILNLVKEAESTLDDVRNMRMGRLRVGTSTTVGIYLLPEIIGEFRKKFSID
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEHHEEHHHHHHHHHHHEEEE
VYFTIGNTAGIEKLIFDNSIDLGIVEGPVHSRDIVVTPYIDDELYLVCSKSHRWAEKKSI
EEEEECCCCCHHHHHCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEECCCCCHHHHCCC
SPAEIENEDIIMREKGSGTREVFEETMARNNVRYRIKYVLNNTEAIKKAVEANIGVSVIS
CCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHCCCCHHHHH
RLAVKKEIRGGRLVKVDIENIRFERKFSIIYHKDKFKSNLFEEFIRHLYNYSIR
HHHHHHHCCCCEEEEEEHHHCEEEEEEEEEEECHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]