Click here to switch to the map view.

The map label for this gene is rbsD

Identifier: 167038833

GI number: 167038833

Start: 163609

End: 164001

Strand: Direct

Name: rbsD

Synonym: Teth514_0163

Alternate gene names: 167038833

Gene position: 163609-164001 (Clockwise)

Preceding gene: 167038832

Following gene: 167038834

Centisome position: 6.66

GC content: 31.55

Gene sequence:

>393_bases
ATGAAAAAGACATATTTGCTGAATAGTGAAATTTCAGAAGTTGTTGCAAGATTAGGGCATACAGATTTGTTGGTGATTGC
TGATAGTGGATTACCTATACCAGATGGTGTTAAAAGAATTGATATTGCTTTAACAAAAGGGATACCGAGTTTTAAAGATA
CATTAAATACGGTACTTACTGAGTTGGGAGTAGAAAAAGCATATATTGCGAAAGAAATGATAGATAAAAATAACGATTTA
TACCTATACCTTCTCGAGCTATTTGGAGAAAAGCTAATAATTATTAGCCATGAAGATTTAAAGGCAATGTCAAAAAACGC
TAGAGCTATTATTAGGACTGGTGAATATAAGCCATATGCAAATATTATTTTAGAGTCAGGTGTGGAATTTTAA

Upstream 100 bases:

>100_bases
CATACGTAGCAGCATTAACGGTTACTAAAGAAGGCGCTCAGTCATCCTTGCCTTATAGAGATGAGGTAGAAAAATTTATT
AAAGAAAGGGGTTATAACAA

Downstream 100 bases:

>100_bases
CAATCCAAAGGGGGGAATAATTTTTGGAACCCGTTTTAGAGATGAGGAATATAACGAAAAAGTTTGGCAATGTTAAAGTT
CTGGATAATGTGAGCTTAAC

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MKKTYLLNSEISEVVARLGHTDLLVIADSGLPIPDGVKRIDIALTKGIPSFKDTLNTVLTELGVEKAYIAKEMIDKNNDL
YLYLLELFGEKLIIISHEDLKAMSKNARAIIRTGEYKPYANIILESGVEF

Sequences:

>Translated_130_residues
MKKTYLLNSEISEVVARLGHTDLLVIADSGLPIPDGVKRIDIALTKGIPSFKDTLNTVLTELGVEKAYIAKEMIDKNNDL
YLYLLELFGEKLIIISHEDLKAMSKNARAIIRTGEYKPYANIILESGVEF
>Mature_130_residues
MKKTYLLNSEISEVVARLGHTDLLVIADSGLPIPDGVKRIDIALTKGIPSFKDTLNTVLTELGVEKAYIAKEMIDKNNDL
YLYLLELFGEKLIIISHEDLKAMSKNARAIIRTGEYKPYANIILESGVEF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=46.0431654676259, Blast_Score=127, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_THEP3 (B0KDE7)

Other databases:

- EMBL:   CP000924
- RefSeq:   YP_001666002.1
- ProteinModelPortal:   B0KDE7
- SMR:   B0KDE7
- GeneID:   5875129
- GenomeReviews:   CP000924_GR
- KEGG:   tpd:Teth39_2041
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- ProtClustDB:   PRK11797
- BioCyc:   TPSE340099:TETH39_2041-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 14525; Mature: 14525

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 97-97

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTYLLNSEISEVVARLGHTDLLVIADSGLPIPDGVKRIDIALTKGIPSFKDTLNTVLT
CCCEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
ELGVEKAYIAKEMIDKNNDLYLYLLELFGEKLIIISHEDLKAMSKNARAIIRTGEYKPYA
HHCCHHHHHHHHHHCCCCCEEEEEHHHHCCEEEEEECHHHHHHHCCCEEEEECCCCCHHH
NIILESGVEF
HHHHHCCCCC
>Mature Secondary Structure
MKKTYLLNSEISEVVARLGHTDLLVIADSGLPIPDGVKRIDIALTKGIPSFKDTLNTVLT
CCCEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
ELGVEKAYIAKEMIDKNNDLYLYLLELFGEKLIIISHEDLKAMSKNARAIIRTGEYKPYA
HHCCHHHHHHHHHHCCCCCEEEEEHHHHCCEEEEEECHHHHHHHCCCEEEEECCCCCHHH
NIILESGVEF
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA