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The map label for this gene is xylR [H]

Identifier: 167038829

GI number: 167038829

Start: 159361

End: 160563

Strand: Direct

Name: xylR [H]

Synonym: Teth514_0159

Alternate gene names: 167038829

Gene position: 159361-160563 (Clockwise)

Preceding gene: 167038828

Following gene: 167038830

Centisome position: 6.49

GC content: 32.92

Gene sequence:

>1203_bases
ATGATAACAGCGGATCAATTATTAGTTAAGCAAATAAATAAATCAATAGTGCTCAATACCATAAGAAAAAAAGGGAATAT
TTCAAGAGCGGATATTGCACATATTACAGGTTTAAACAAGTCAACTGTCTCTTTCCTTGTTGATGAACTTATAAACGAAG
GGTTTGTAAGGGAAGAAGGGCCTGGTGCATCAAAAGGTGGTAGAAAACCAATCATATTAAGCATCAATAACAATGCTGGC
TGTATAATAGGTATTGATTTGGATGTAAACTATATATTAATTGTTTTGACTGATTTAATGGCAAATGTCATTTGGGAAAA
GAAAGTCGATATAAAAATTGGTGAAAGTCAACAGGCTATTATTGAGCGTTTAATAGAATTGATTGACGAAGCAATTTTAA
ATGCACCTAACACTATTAGGGGAATTTTAGGTATTGGGATTGGTGTGCCAGGCATTGTGGATTACAAAAAAGGCAGTATA
TTGATGGCGCCGAATTTAAAATGGCAGGATGTGCCTCTTAAAGAAATCATAGAAAATAAATTCAAAATTAAAGTACACAT
AGATAACGAAGCAAATGTAGGAGCAATAGGTGAGAAGTGGTTTGGCACTGGAATTAAATACAACAATTTCGTATATGTAA
GTGCTGGAATTGGTATTGGTACAGGAATAATAATCAATGGAGAACTGTATAGAGGGACAGTAGGGCTGGCAGGAGAAATG
GGACATATGACAATAAATATACATGACCATCAATGTAGTTGTGGAAATACAGGTTGTTGGGAAAATTATGCATCAGAAAA
AGCACTATTCGATTATATACATACACAGTTGATAATGGGAAAATCTGATAATTATATAAATAAAGATAATTTTAATACAC
TTAGTGCTCTTGATATTATAAATTATGCTCAAAAAGGAAGCGAAATAGCAGTAGAGGCTTTAAAAGAAATTGGAAGGAAA
TTGGGTGTGGGAATTGTCAATGTAATAAATACATTTAACCCGGAACTTGTGATTATTGGAAATACGTTGTCTTTAGCAGG
AGATTTGATTTTGGATGAGGTTTTGAAAGAAGTAGAAAAAAAGTGTCTTGTGTATAGATATTATAAAGTAAAAATCAAAA
CCTCTAAACTTCAATTTCATGCAGGAGCAATTGGAGCAGTATCGCTTGTTATTTCAGAGTTGTTTGCATATCCTGGACTT
TAA

Upstream 100 bases:

>100_bases
ACTTATAGCTGTATGGATAGATGTGGTATCTAAAAATAAATAGTGATATAATTAATATATGGAAAATAAAACAATGAAAA
TGGAATAAAAAGGTGAAGAA

Downstream 100 bases:

>100_bases
TTATATGAGGTGTTGACATGGAAAAATTAAAAGCAATTATTATAGGGCCAGGGAATATTTTTAATAAAGCCTATTTGCCT
TTCATATTTAATTTAGATGA

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MITADQLLVKQINKSIVLNTIRKKGNISRADIAHITGLNKSTVSFLVDELINEGFVREEGPGASKGGRKPIILSINNNAG
CIIGIDLDVNYILIVLTDLMANVIWEKKVDIKIGESQQAIIERLIELIDEAILNAPNTIRGILGIGIGVPGIVDYKKGSI
LMAPNLKWQDVPLKEIIENKFKIKVHIDNEANVGAIGEKWFGTGIKYNNFVYVSAGIGIGTGIIINGELYRGTVGLAGEM
GHMTINIHDHQCSCGNTGCWENYASEKALFDYIHTQLIMGKSDNYINKDNFNTLSALDIINYAQKGSEIAVEALKEIGRK
LGVGIVNVINTFNPELVIIGNTLSLAGDLILDEVLKEVEKKCLVYRYYKVKIKTSKLQFHAGAIGAVSLVISELFAYPGL

Sequences:

>Translated_400_residues
MITADQLLVKQINKSIVLNTIRKKGNISRADIAHITGLNKSTVSFLVDELINEGFVREEGPGASKGGRKPIILSINNNAG
CIIGIDLDVNYILIVLTDLMANVIWEKKVDIKIGESQQAIIERLIELIDEAILNAPNTIRGILGIGIGVPGIVDYKKGSI
LMAPNLKWQDVPLKEIIENKFKIKVHIDNEANVGAIGEKWFGTGIKYNNFVYVSAGIGIGTGIIINGELYRGTVGLAGEM
GHMTINIHDHQCSCGNTGCWENYASEKALFDYIHTQLIMGKSDNYINKDNFNTLSALDIINYAQKGSEIAVEALKEIGRK
LGVGIVNVINTFNPELVIIGNTLSLAGDLILDEVLKEVEKKCLVYRYYKVKIKTSKLQFHAGAIGAVSLVISELFAYPGL
>Mature_400_residues
MITADQLLVKQINKSIVLNTIRKKGNISRADIAHITGLNKSTVSFLVDELINEGFVREEGPGASKGGRKPIILSINNNAG
CIIGIDLDVNYILIVLTDLMANVIWEKKVDIKIGESQQAIIERLIELIDEAILNAPNTIRGILGIGIGVPGIVDYKKGSI
LMAPNLKWQDVPLKEIIENKFKIKVHIDNEANVGAIGEKWFGTGIKYNNFVYVSAGIGIGTGIIINGELYRGTVGLAGEM
GHMTINIHDHQCSCGNTGCWENYASEKALFDYIHTQLIMGKSDNYINKDNFNTLSALDIINYAQKGSEIAVEALKEIGRK
LGVGIVNVINTFNPELVIIGNTLSLAGDLILDEVLKEVEKKCLVYRYYKVKIKTSKLQFHAGAIGAVSLVISELFAYPGL

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Homo sapiens, GI298566325, Length=244, Percent_Identity=33.6065573770492, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI298566315, Length=244, Percent_Identity=33.6065573770492, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI4885285, Length=244, Percent_Identity=33.6065573770492, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI190014632, Length=244, Percent_Identity=33.6065573770492, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI298566312, Length=133, Percent_Identity=33.0827067669173, Blast_Score=72, Evalue=8e-13,
Organism=Escherichia coli, GI1786891, Length=383, Percent_Identity=29.242819843342, Blast_Score=165, Evalue=4e-42,
Organism=Escherichia coli, GI1787878, Length=390, Percent_Identity=23.5897435897436, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1787363, Length=272, Percent_Identity=27.5735294117647, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI87082127, Length=192, Percent_Identity=27.0833333333333, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081733, Length=274, Percent_Identity=22.6277372262774, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790522, Length=265, Percent_Identity=24.5283018867925, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR; PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 43721; Mature: 43721

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITADQLLVKQINKSIVLNTIRKKGNISRADIAHITGLNKSTVSFLVDELINEGFVREEG
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
PGASKGGRKPIILSINNNAGCIIGIDLDVNYILIVLTDLMANVIWEKKVDIKIGESQQAI
CCCCCCCCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
IERLIELIDEAILNAPNTIRGILGIGIGVPGIVDYKKGSILMAPNLKWQDVPLKEIIENK
HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEECCCCEEECCCCCCCCCCHHHHHCCC
FKIKVHIDNEANVGAIGEKWFGTGIKYNNFVYVSAGIGIGTGIIINGELYRGTVGLAGEM
EEEEEEECCCCCCCCCCHHHHCCCEEECCEEEEEECCCCCCEEEECCEEEECEEEECCCC
GHMTINIHDHQCSCGNTGCWENYASEKALFDYIHTQLIMGKSDNYINKDNFNTLSALDII
CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHH
NYAQKGSEIAVEALKEIGRKLGVGIVNVINTFNPELVIIGNTLSLAGDLILDEVLKEVEK
HHHHCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHH
KCLVYRYYKVKIKTSKLQFHAGAIGAVSLVISELFAYPGL
HHEEEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MITADQLLVKQINKSIVLNTIRKKGNISRADIAHITGLNKSTVSFLVDELINEGFVREEG
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
PGASKGGRKPIILSINNNAGCIIGIDLDVNYILIVLTDLMANVIWEKKVDIKIGESQQAI
CCCCCCCCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
IERLIELIDEAILNAPNTIRGILGIGIGVPGIVDYKKGSILMAPNLKWQDVPLKEIIENK
HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEECCCCEEECCCCCCCCCCHHHHHCCC
FKIKVHIDNEANVGAIGEKWFGTGIKYNNFVYVSAGIGIGTGIIINGELYRGTVGLAGEM
EEEEEEECCCCCCCCCCHHHHCCCEEECCEEEEEECCCCCCEEEECCEEEECEEEECCCC
GHMTINIHDHQCSCGNTGCWENYASEKALFDYIHTQLIMGKSDNYINKDNFNTLSALDII
CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHH
NYAQKGSEIAVEALKEIGRKLGVGIVNVINTFNPELVIIGNTLSLAGDLILDEVLKEVEK
HHHHCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHH
KCLVYRYYKVKIKTSKLQFHAGAIGAVSLVISELFAYPGL
HHEEEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8920183 [H]