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The map label for this gene is ywbI [H]

Identifier: 167038819

GI number: 167038819

Start: 145277

End: 146167

Strand: Direct

Name: ywbI [H]

Synonym: Teth514_0147

Alternate gene names: 167038819

Gene position: 145277-146167 (Clockwise)

Preceding gene: 167038816

Following gene: 167038821

Centisome position: 5.91

GC content: 37.04

Gene sequence:

>891_bases
ATGGAAATCGATATTACTTCTCTTAAATATTTCGTGCTTATATGCAAAAATAAGAGCTTTTCCAAAGCTGCAGAGGAACT
TTTTATAACCCAGCAGGCTGTAAGCAAGCGCATCCAAAAGCTAGAAAAGCAGTTAGGCACACAGCTTTTTGAACGTACAC
CCCGAGGCGTCACTCTTACGGAAACGGGTAGGTATGTCCTTTCGAGGGCGGAACTTCTTGTCAAAACTTATGATGAATTC
ATTTCCGATGTAAAAAGTAAAATAGACCAAGAAAAAACAACGATAAAAATAGGGTTTGCCCCTGGCACTCTCCAAATTTT
AGGGGTCAAGGCAATAATTGAATTCGAGCAAAAAAACCGGGATATCCACATTGAAATAGCAGAATTTTCCGATATAGACT
GTGAAGCTAATGTATTAAACGGAACTCTAGATCTAGCTTTGACAGTAAAACCTAAAGACCTGAGCAATTTTATCTATAAT
CCTCTCATAAGGGAAAAATTAATCGTTACAGTCAATAAAGCCAACCCTCTTTCATCTAAAGAAAGTGTAAGATTTGAGGA
CCTTAAAAACGAAAAACTGATACTATTGAGCGATACTTTTCGGATCCAACCAGTTATCCTTGAACATTTTGAGAAAGCGG
GCCTTGTTCCAAAAATTTACTTTAAATCAAGCCACGATTTGAAAGTCGCTTACGACTTTGTGGAATTGAACCAGGGCATT
TTTATATTTGTGGACAAACTAAAGCCTCCCCACATAGAAGAATATAAAAATATAAAGGTAATCCCCATTGATGATCCCAC
AGCTTACTGGGATGCCGGATTTATAGTAAAAAAGGGAACAAAGATTAGCAAAGCTGCGAAAAGGTTTATAGATTACTTCA
TAGACAAATAA

Upstream 100 bases:

>100_bases
AATCTTTTTTTGACCGTAAAGATATCCTTTCAAAGGCCTTGATACCTTTAAATCCATATTGTAAAATTTCAGTAGTAGAC
CAAGAAGCGAGGGTGATGAA

Downstream 100 bases:

>100_bases
AAAACAAGTCAGAAACTATTTTTTAATTACTTTCTTATTTCCTAAACCTTTTGAATCAAAGTTGCGGGACTTCTTTCCTT
TATTGCTAAAAATGACATAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MEIDITSLKYFVLICKNKSFSKAAEELFITQQAVSKRIQKLEKQLGTQLFERTPRGVTLTETGRYVLSRAELLVKTYDEF
ISDVKSKIDQEKTTIKIGFAPGTLQILGVKAIIEFEQKNRDIHIEIAEFSDIDCEANVLNGTLDLALTVKPKDLSNFIYN
PLIREKLIVTVNKANPLSSKESVRFEDLKNEKLILLSDTFRIQPVILEHFEKAGLVPKIYFKSSHDLKVAYDFVELNQGI
FIFVDKLKPPHIEEYKNIKVIPIDDPTAYWDAGFIVKKGTKISKAAKRFIDYFIDK

Sequences:

>Translated_296_residues
MEIDITSLKYFVLICKNKSFSKAAEELFITQQAVSKRIQKLEKQLGTQLFERTPRGVTLTETGRYVLSRAELLVKTYDEF
ISDVKSKIDQEKTTIKIGFAPGTLQILGVKAIIEFEQKNRDIHIEIAEFSDIDCEANVLNGTLDLALTVKPKDLSNFIYN
PLIREKLIVTVNKANPLSSKESVRFEDLKNEKLILLSDTFRIQPVILEHFEKAGLVPKIYFKSSHDLKVAYDFVELNQGI
FIFVDKLKPPHIEEYKNIKVIPIDDPTAYWDAGFIVKKGTKISKAAKRFIDYFIDK
>Mature_296_residues
MEIDITSLKYFVLICKNKSFSKAAEELFITQQAVSKRIQKLEKQLGTQLFERTPRGVTLTETGRYVLSRAELLVKTYDEF
ISDVKSKIDQEKTTIKIGFAPGTLQILGVKAIIEFEQKNRDIHIEIAEFSDIDCEANVLNGTLDLALTVKPKDLSNFIYN
PLIREKLIVTVNKANPLSSKESVRFEDLKNEKLILLSDTFRIQPVILEHFEKAGLVPKIYFKSSHDLKVAYDFVELNQGI
FIFVDKLKPPHIEEYKNIKVIPIDDPTAYWDAGFIVKKGTKISKAAKRFIDYFIDK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=295, Percent_Identity=28.135593220339, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI157672245, Length=293, Percent_Identity=26.6211604095563, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1787879, Length=301, Percent_Identity=24.2524916943522, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790399, Length=301, Percent_Identity=22.5913621262458, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1788748, Length=243, Percent_Identity=22.6337448559671, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788887, Length=240, Percent_Identity=25.4166666666667, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788297, Length=219, Percent_Identity=29.2237442922374, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787601, Length=186, Percent_Identity=25.2688172043011, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787530, Length=262, Percent_Identity=22.5190839694656, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI145693193, Length=235, Percent_Identity=27.2340425531915, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789506, Length=297, Percent_Identity=22.5589225589226, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788706, Length=196, Percent_Identity=26.530612244898, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87081904, Length=178, Percent_Identity=26.4044943820225, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI48994962, Length=75, Percent_Identity=42.6666666666667, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788481, Length=196, Percent_Identity=26.530612244898, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790208, Length=193, Percent_Identity=24.3523316062176, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI2367136, Length=255, Percent_Identity=21.9607843137255, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33941; Mature: 33941

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIDITSLKYFVLICKNKSFSKAAEELFITQQAVSKRIQKLEKQLGTQLFERTPRGVTLT
CEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
ETGRYVLSRAELLVKTYDEFISDVKSKIDQEKTTIKIGFAPGTLQILGVKAIIEFEQKNR
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEEEEEEHHCCC
DIHIEIAEFSDIDCEANVLNGTLDLALTVKPKDLSNFIYNPLIREKLIVTVNKANPLSSK
EEEEEEECCCCCCCCCEEECCEEEEEEEECCCHHHHHHHCHHHCCEEEEEEECCCCCCCC
ESVRFEDLKNEKLILLSDTFRIQPVILEHFEKAGLVPKIYFKSSHDLKVAYDFVELNQGI
CCCCHHHCCCCEEEEEECCCEECHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEECCCCE
FIFVDKLKPPHIEEYKNIKVIPIDDPTAYWDAGFIVKKGTKISKAAKRFIDYFIDK
EEEEECCCCCCCHHHCCEEEEECCCCCCEECCCEEEECCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEIDITSLKYFVLICKNKSFSKAAEELFITQQAVSKRIQKLEKQLGTQLFERTPRGVTLT
CEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
ETGRYVLSRAELLVKTYDEFISDVKSKIDQEKTTIKIGFAPGTLQILGVKAIIEFEQKNR
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEEEEEEHHCCC
DIHIEIAEFSDIDCEANVLNGTLDLALTVKPKDLSNFIYNPLIREKLIVTVNKANPLSSK
EEEEEEECCCCCCCCCEEECCEEEEEEEECCCHHHHHHHCHHHCCEEEEEEECCCCCCCC
ESVRFEDLKNEKLILLSDTFRIQPVILEHFEKAGLVPKIYFKSSHDLKVAYDFVELNQGI
CCCCHHHCCCCEEEEEECCCEECHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEECCCCE
FIFVDKLKPPHIEEYKNIKVIPIDDPTAYWDAGFIVKKGTKISKAAKRFIDYFIDK
EEEEECCCCCCCHHHCCEEEEECCCCCCEECCCEEEECCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]