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The map label for this gene is rnfB [H]

Identifier: 167038757

GI number: 167038757

Start: 84845

End: 85660

Strand: Direct

Name: rnfB [H]

Synonym: Teth514_0084

Alternate gene names: 167038757

Gene position: 84845-85660 (Clockwise)

Preceding gene: 167038756

Following gene: 167038758

Centisome position: 3.45

GC content: 35.29

Gene sequence:

>816_bases
ATGGATGGTATATTGTATGCAATAGTAGTATTAGGCGGTTTAGGATTTTTATTTGGATCAAGTCTTTCTTTAGCATCTAA
GATTTTTGCTGTGGAGATAAATCCAAAAGTAAAAAAGATAAGAGAAGTTTTACCAGGTGCAAACTGTGGGGCTTGTGGAT
ATCCCGGTTGTGATGCCTATGCTAATGCAATTGTAGAGGGGAAAGCTCCAGTAAATGCTTGTAGTGTTGGGGGAAATTCT
GTAGCAAAAAAAGTGGCAAATATAATGGGAGTCGACGCTGTAGAAGTAGAAAGAAAAGTAGCAACTGTATTATGCCAAGG
AGATCGTAATAAAGCAAAAGATAAATATCTCTATTATGGTATAAGGGATTGTAGGGCTCAAAATATATTAGCTGGAGGAA
GCAAATCTTGCTCATACGGCTGTTTAGGTTGTGGTACTTGTGTGGATGTTTGTGATTATGGTGCAATTCAAATTATTAAT
GGAGTTGCTGTTATAGATAAAGAAAAATGTGTGGCTTGCAAAGCTTGTATAGAAGTTTGTCCTAAAGGAATAATTGAGCT
TGTACCCTATGACCAAGAAGTGATAATAAAATGTAAGAGTAATGATCCGGGTAAGGTAGTTAGAAGCAATTGTAGCGTTG
GATGTATTGGATGTCAAATATGTGTTAAAAGTTGCCCTGAAAATGCAATTACTTTTGAAAATTATCTAGCAAAGATTAAC
TATGAAAAATGTACTAATTGTGGAATTTGTGCTGAAAAATGTCCTACAGGTACCATATTTTCGAGTCTAGAACAGGTAAG
GAAGAAAGTACAATAA

Upstream 100 bases:

>100_bases
TTCCAAAGGCTTTAGAAGGTGTTCCAATAACATTAATAACTGCAGGTCTTATATCCATAGCGTTTTTAGGATTTAATGGG
CTTGTTTAGGAGGTAATAAA

Downstream 100 bases:

>100_bases
TTTAGAGCCTTTAATTAGGCTCTTTTTTATTCTTTTATAATTATTTTGTAAATAAAAAATATAAATGGTAAACTAAGTAT
GACGTTTGTAGAAATAAACT

Product: RnfABCDGE type electron transport complex subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MDGILYAIVVLGGLGFLFGSSLSLASKIFAVEINPKVKKIREVLPGANCGACGYPGCDAYANAIVEGKAPVNACSVGGNS
VAKKVANIMGVDAVEVERKVATVLCQGDRNKAKDKYLYYGIRDCRAQNILAGGSKSCSYGCLGCGTCVDVCDYGAIQIIN
GVAVIDKEKCVACKACIEVCPKGIIELVPYDQEVIIKCKSNDPGKVVRSNCSVGCIGCQICVKSCPENAITFENYLAKIN
YEKCTNCGICAEKCPTGTIFSSLEQVRKKVQ

Sequences:

>Translated_271_residues
MDGILYAIVVLGGLGFLFGSSLSLASKIFAVEINPKVKKIREVLPGANCGACGYPGCDAYANAIVEGKAPVNACSVGGNS
VAKKVANIMGVDAVEVERKVATVLCQGDRNKAKDKYLYYGIRDCRAQNILAGGSKSCSYGCLGCGTCVDVCDYGAIQIIN
GVAVIDKEKCVACKACIEVCPKGIIELVPYDQEVIIKCKSNDPGKVVRSNCSVGCIGCQICVKSCPENAITFENYLAKIN
YEKCTNCGICAEKCPTGTIFSSLEQVRKKVQ
>Mature_271_residues
MDGILYAIVVLGGLGFLFGSSLSLASKIFAVEINPKVKKIREVLPGANCGACGYPGCDAYANAIVEGKAPVNACSVGGNS
VAKKVANIMGVDAVEVERKVATVLCQGDRNKAKDKYLYYGIRDCRAQNILAGGSKSCSYGCLGCGTCVDVCDYGAIQIIN
GVAVIDKEKCVACKACIEVCPKGIIELVPYDQEVIIKCKSNDPGKVVRSNCSVGCIGCQICVKSCPENAITFENYLAKIN
YEKCTNCGICAEKCPTGTIFSSLEQVRKKVQ

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=190, Percent_Identity=30.5263157894737, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 28635; Mature: 28635

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
10.0 %Cys+Met (Translated Protein)
9.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
10.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGILYAIVVLGGLGFLFGSSLSLASKIFAVEINPKVKKIREVLPGANCGACGYPGCDAY
CCHHHHHHHHHHHHHHHHCCCHHHHHEEEEEEECHHHHHHHHHCCCCCCCCCCCCCHHHH
ANAIVEGKAPVNACSVGGNSVAKKVANIMGVDAVEVERKVATVLCQGDRNKAKDKYLYYG
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEE
IRDCRAQNILAGGSKSCSYGCLGCGTCVDVCDYGAIQIINGVAVIDKEKCVACKACIEVC
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCEEEECCHHHHHHHHHHHHC
PKGIIELVPYDQEVIIKCKSNDPGKVVRSNCSVGCIGCQICVKSCPENAITFENYLAKIN
CHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHCC
YEKCTNCGICAEKCPTGTIFSSLEQVRKKVQ
HHHCCCCCCCHHHCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MDGILYAIVVLGGLGFLFGSSLSLASKIFAVEINPKVKKIREVLPGANCGACGYPGCDAY
CCHHHHHHHHHHHHHHHHCCCHHHHHEEEEEEECHHHHHHHHHCCCCCCCCCCCCCHHHH
ANAIVEGKAPVNACSVGGNSVAKKVANIMGVDAVEVERKVATVLCQGDRNKAKDKYLYYG
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEE
IRDCRAQNILAGGSKSCSYGCLGCGTCVDVCDYGAIQIINGVAVIDKEKCVACKACIEVC
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCEEEECCHHHHHHHHHHHHC
PKGIIELVPYDQEVIIKCKSNDPGKVVRSNCSVGCIGCQICVKSCPENAITFENYLAKIN
CHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHCC
YEKCTNCGICAEKCPTGTIFSSLEQVRKKVQ
HHHCCCCCCCHHHCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA