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The map label for this gene is sigI [H]

Identifier: 167038747

GI number: 167038747

Start: 75887

End: 76543

Strand: Reverse

Name: sigI [H]

Synonym: Teth514_0074

Alternate gene names: 167038747

Gene position: 76543-75887 (Counterclockwise)

Preceding gene: 167038749

Following gene: 167038746

Centisome position: 3.11

GC content: 29.38

Gene sequence:

>657_bases
TTGGATATAAACGACAGAGTATACGCAGCCAAAAAAGATCCCTCCGAAAGAGAAAAATTAATTCAAGAATATACCCCCTT
TGTCATAAAACAATTGTCTTTATTTACAAATAGATATATAGATGAAAGAAATAGCAACGAATTAAGCATAGGCCTTATAG
CTTTTAACGAAGCTATAGACAGTTTTGATAACACAAAAGGTCCCTTCTTAAGCTTTTCAAGTTTGCTCATTAAAAGGCGA
CTTATAGATTTTTTACGGCAAAATCAGCAAAATACTATTCCTTTAGAACTATATGTAGAAAAAGGCACTGATTATGAGGC
AGAAAATAGAAAATTAGAAATGATTTCTTTTGTAAACTTGCTAAGTCTTTACAATATAACTTTAGATGATTTAGTTAAGC
AATCCCCCAAACACTCAGACACCAGAAAAATAGCTACAAAAATTGCTTATACAATTTGTAAAAACGAGAAATTACTAGAA
TATTTAAAAAACAGAAAGAATCTTCCTATAAAAGATTTAATAAGTATTTTAAAAGTAAGCCGCAAGACTATAGAAAAACA
TAGAAAATACATAATAGCGTTAGTAATAATTATTTCTGAAGACTTACCTCTTCTAAAACAATACATAAGCCCAGAAAGTG
AGGTGGCAAAAATATGA

Upstream 100 bases:

>100_bases
GTATTTTTTTGTTGACATTTATATTATAATATATAATCATTATTAATAGAATACCCGCAAAAAATTTTGTCGATGCGAAT
AATATAGTGGGGTGGTTAAG

Downstream 100 bases:

>100_bases
AGGCTGTTGTAGTTCAAAAAGAAAAAAATAAAACTTATGTAATGACTGAAAAAGGAGAATTTAAGTGCTTGAAAAATTTG
CAAAATGTAGATATAGGTGA

Product: putative RNA polymerase sigma factor SigI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MDINDRVYAAKKDPSEREKLIQEYTPFVIKQLSLFTNRYIDERNSNELSIGLIAFNEAIDSFDNTKGPFLSFSSLLIKRR
LIDFLRQNQQNTIPLELYVEKGTDYEAENRKLEMISFVNLLSLYNITLDDLVKQSPKHSDTRKIATKIAYTICKNEKLLE
YLKNRKNLPIKDLISILKVSRKTIEKHRKYIIALVIIISEDLPLLKQYISPESEVAKI

Sequences:

>Translated_218_residues
MDINDRVYAAKKDPSEREKLIQEYTPFVIKQLSLFTNRYIDERNSNELSIGLIAFNEAIDSFDNTKGPFLSFSSLLIKRR
LIDFLRQNQQNTIPLELYVEKGTDYEAENRKLEMISFVNLLSLYNITLDDLVKQSPKHSDTRKIATKIAYTICKNEKLLE
YLKNRKNLPIKDLISILKVSRKTIEKHRKYIIALVIIISEDLPLLKQYISPESEVAKI
>Mature_218_residues
MDINDRVYAAKKDPSEREKLIQEYTPFVIKQLSLFTNRYIDERNSNELSIGLIAFNEAIDSFDNTKGPFLSFSSLLIKRR
LIDFLRQNQQNTIPLELYVEKGTDYEAENRKLEMISFVNLLSLYNITLDDLVKQSPKHSDTRKIATKIAYTICKNEKLLE
YLKNRKNLPIKDLISILKVSRKTIEKHRKYIIALVIIISEDLPLLKQYISPESEVAKI

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor plays a role in survival at low temperatures and could be involved in heat shock stress response, posi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014244
- InterPro:   IPR007627
- InterPro:   IPR013325 [H]

Pfam domain/function: PF04542 Sigma70_r2 [H]

EC number: NA

Molecular weight: Translated: 25458; Mature: 25458

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDINDRVYAAKKDPSEREKLIQEYTPFVIKQLSLFTNRYIDERNSNELSIGLIAFNEAID
CCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHH
SFDNTKGPFLSFSSLLIKRRLIDFLRQNQQNTIPLELYVEKGTDYEAENRKLEMISFVNL
HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHH
LSLYNITLDDLVKQSPKHSDTRKIATKIAYTICKNEKLLEYLKNRKNLPIKDLISILKVS
HHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHH
RKTIEKHRKYIIALVIIISEDLPLLKQYISPESEVAKI
HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHCC
>Mature Secondary Structure
MDINDRVYAAKKDPSEREKLIQEYTPFVIKQLSLFTNRYIDERNSNELSIGLIAFNEAID
CCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHH
SFDNTKGPFLSFSSLLIKRRLIDFLRQNQQNTIPLELYVEKGTDYEAENRKLEMISFVNL
HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHH
LSLYNITLDDLVKQSPKHSDTRKIATKIAYTICKNEKLLEYLKNRKNLPIKDLISILKVS
HHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHH
RKTIEKHRKYIIALVIIISEDLPLLKQYISPESEVAKI
HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]