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The map label for this gene is aglR [H]

Identifier: 163844484

GI number: 163844484

Start: 288644

End: 289660

Strand: Reverse

Name: aglR [H]

Synonym: BSUIS_B0308

Alternate gene names: 163844484

Gene position: 289660-288644 (Counterclockwise)

Preceding gene: 163844494

Following gene: 163844482

Centisome position: 20.68

GC content: 60.18

Gene sequence:

>1017_bases
ATGAAACTCCGTGAATTCGCCAAACATATGGGCCTTTCCGCCACGACCGTCAGCCGGGCGCTGAGCGGCTATCCCGAAGT
GGCGGAAAGCACGCGCAAGCGCGTGATGGAAGAGGCCATCCGTCTTGGCTATCGCCCCAACGTGAATGCGGTGCGGCTGG
TAACGGGCCGCGCGGGCGCAATCGGCGTCGTGATGGGCCGCAACAGCGAGTTTCACTTTGCCGAATTCATGCGCGGCATG
GCCGAACGGCTGGGGCAGGACGAAGTGGACATTCTCGTCAGCCCCACCTCGCCGACCGGCAATGACGACGAGGTGCAGCT
TTGTCACCGGCTGGCAACGAGCGGACGGGTGGATGCCGTTATCGTCACTTCCCCCAGGCCGAATGATGAACGCATCCGCA
TGTTGCACAAGCTCGGCATGCCGTTTCTGGTCCACGGGCGTTCGCAGATCGACATTCCCCATGCATGGCTTGATATCGAC
AATGAGAGCGCGGTCTATCATTCCACCGCACATCTGCTCGATCTTGGCCACAAGCGGATTGCGATGATCAACGGGCGCCA
TGGCTTCACCTTCTCGCTGCACCGCGACGCTGGCTATCGTAAGGCGCTTGAAAGCCGGGGAATCGACTTTGATCCCGACC
TGGTGGAACATGCCGATTTCACCGATGAAATCGGCTATTGCCTCGCCCGCAAGCTTCTGGAACGCAATCCACGTCCAACG
GCATTCGTCGCAGGCTCCATGATGACCGCGCTCGGCATCTACCGTGCCGCCCGCTCCTTCGGCCTTACGATCGGCAAGGA
TATTTCCGTCATCGCCCATGACGACGTGATCTCGTTCCTCAGCGCCGGTAATATGGTGCCGTCGCTGACTGCGACACGCT
CTTCAATGCGCGCGGCTGGCAAGCGATGCGCCGACCTTTTGATGGATATCCTCGATGGGCGCGCGCCCACCGAAATCCAT
GAATTATGGCCGGTTGAACTGATCCTTCGCGAATCCGCCACCCGTGTTCCCGAATGA

Upstream 100 bases:

>100_bases
ACAATGAATGACCATAAATTACAGACACCATCCGCCCCAATTGTTAAATGCATGGAAGCGGCTATAATCCGCCGCCCCGC
CTGCCCAGTCTGAAAGCCAA

Downstream 100 bases:

>100_bases
GCCTGCTACCCATAGCCCATCAATAGATGGCAGCCCGGTTTTGCTGGAAATGCTCTAAGCGGGGCGCGTAGGTTCTTCCT
GGTCGATGAGACTGGACGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MKLREFAKHMGLSATTVSRALSGYPEVAESTRKRVMEEAIRLGYRPNVNAVRLVTGRAGAIGVVMGRNSEFHFAEFMRGM
AERLGQDEVDILVSPTSPTGNDDEVQLCHRLATSGRVDAVIVTSPRPNDERIRMLHKLGMPFLVHGRSQIDIPHAWLDID
NESAVYHSTAHLLDLGHKRIAMINGRHGFTFSLHRDAGYRKALESRGIDFDPDLVEHADFTDEIGYCLARKLLERNPRPT
AFVAGSMMTALGIYRAARSFGLTIGKDISVIAHDDVISFLSAGNMVPSLTATRSSMRAAGKRCADLLMDILDGRAPTEIH
ELWPVELILRESATRVPE

Sequences:

>Translated_338_residues
MKLREFAKHMGLSATTVSRALSGYPEVAESTRKRVMEEAIRLGYRPNVNAVRLVTGRAGAIGVVMGRNSEFHFAEFMRGM
AERLGQDEVDILVSPTSPTGNDDEVQLCHRLATSGRVDAVIVTSPRPNDERIRMLHKLGMPFLVHGRSQIDIPHAWLDID
NESAVYHSTAHLLDLGHKRIAMINGRHGFTFSLHRDAGYRKALESRGIDFDPDLVEHADFTDEIGYCLARKLLERNPRPT
AFVAGSMMTALGIYRAARSFGLTIGKDISVIAHDDVISFLSAGNMVPSLTATRSSMRAAGKRCADLLMDILDGRAPTEIH
ELWPVELILRESATRVPE
>Mature_338_residues
MKLREFAKHMGLSATTVSRALSGYPEVAESTRKRVMEEAIRLGYRPNVNAVRLVTGRAGAIGVVMGRNSEFHFAEFMRGM
AERLGQDEVDILVSPTSPTGNDDEVQLCHRLATSGRVDAVIVTSPRPNDERIRMLHKLGMPFLVHGRSQIDIPHAWLDID
NESAVYHSTAHLLDLGHKRIAMINGRHGFTFSLHRDAGYRKALESRGIDFDPDLVEHADFTDEIGYCLARKLLERNPRPT
AFVAGSMMTALGIYRAARSFGLTIGKDISVIAHDDVISFLSAGNMVPSLTATRSSMRAAGKRCADLLMDILDGRAPTEIH
ELWPVELILRESATRVPE

Specific function: Probable regulatory protein for the binding-protein- dependent transport system for alpha-glucosides such as sucrose, maltose and trehalose [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=338, Percent_Identity=26.9230769230769, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1789068, Length=314, Percent_Identity=28.343949044586, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1787948, Length=340, Percent_Identity=26.7647058823529, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1787580, Length=319, Percent_Identity=22.884012539185, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786540, Length=343, Percent_Identity=24.7813411078717, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788474, Length=338, Percent_Identity=28.1065088757396, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790194, Length=319, Percent_Identity=25.0783699059561, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789202, Length=332, Percent_Identity=24.6987951807229, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1787906, Length=266, Percent_Identity=27.8195488721804, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37437; Mature: 37437

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLREFAKHMGLSATTVSRALSGYPEVAESTRKRVMEEAIRLGYRPNVNAVRLVTGRAGA
CCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCE
IGVVMGRNSEFHFAEFMRGMAERLGQDEVDILVSPTSPTGNDDEVQLCHRLATSGRVDAV
EEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEE
IVTSPRPNDERIRMLHKLGMPFLVHGRSQIDIPHAWLDIDNESAVYHSTAHLLDLGHKRI
EEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEE
AMINGRHGFTFSLHRDAGYRKALESRGIDFDPDLVEHADFTDEIGYCLARKLLERNPRPT
EEEECCCCEEEEEECCCHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCC
AFVAGSMMTALGIYRAARSFGLTIGKDISVIAHDDVISFLSAGNMVPSLTATRSSMRAAG
EEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHH
KRCADLLMDILDGRAPTEIHELWPVELILRESATRVPE
HHHHHHHHHHHCCCCCCHHHHHCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKLREFAKHMGLSATTVSRALSGYPEVAESTRKRVMEEAIRLGYRPNVNAVRLVTGRAGA
CCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCE
IGVVMGRNSEFHFAEFMRGMAERLGQDEVDILVSPTSPTGNDDEVQLCHRLATSGRVDAV
EEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEE
IVTSPRPNDERIRMLHKLGMPFLVHGRSQIDIPHAWLDIDNESAVYHSTAHLLDLGHKRI
EEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEE
AMINGRHGFTFSLHRDAGYRKALESRGIDFDPDLVEHADFTDEIGYCLARKLLERNPRPT
EEEECCCCEEEEEECCCHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCC
AFVAGSMMTALGIYRAARSFGLTIGKDISVIAHDDVISFLSAGNMVPSLTATRSSMRAAG
EEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHH
KRCADLLMDILDGRAPTEIHELWPVELILRESATRVPE
HHHHHHHHHHHCCCCCCHHHHHCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10400573; 11481430 [H]