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The map label for this gene is virB5 [H]

Identifier: 163844263

GI number: 163844263

Start: 62241

End: 62957

Strand: Reverse

Name: virB5 [H]

Synonym: BSUIS_B0069

Alternate gene names: 163844263

Gene position: 62957-62241 (Counterclockwise)

Preceding gene: 163844264

Following gene: 163844262

Centisome position: 4.49

GC content: 55.79

Gene sequence:

>717_bases
ATGAAGAAGATAATTCTCAGCTTCGCATTCGCCCTGACTGTAACCAGCACGGCGCACGCACAGCTCCCGGTGACAGATGC
CGGCTCCATCGCGCAGAACCTGGCCAACCATCTCGAACAGATGGTGAAGTTCGCCCAGCAGATCGAGCAACTGAAACAGC
AGTTTGAAGAACAGAAAATGCAGTTCGATGCCCTGACCGGTAACCGTGGCCTTGGCGATATTCTCCGCAACCCTACGCTG
CGTAGCTATCTGCCACATAACTGGCGAGATCTCTACGAAGCGGTGATGAGCGGCGGCTACCTGGCGGCGGCTGGCGAAAC
GGCCAACCTCTTACGCAAAAGCCAGGTATACGATCCGTGTGCCTCCATCTCCGACAAAGATCAGCGCATCGCATGTGAGG
CTAAAGTGGTGAAGCCGGTCCAGGACAAGGTCATGACGTCCAAAGCCTACGACGCCACTGACAAACGCCTACAAGAGATC
GAGAGCTTGATGCAGGAGATCAACAAGACGGGAGACCCGAAGGCGATTGCCGAATTGCAAGGCCGGATCGAAAGCGAAAA
TGCCATGATCCAAAACGAAGACACCCGCCTTCATCTCTACCAGCAGATGGCAGAGGCACAGGACAAGCTCCTGGACGAAC
GCCAGCACGAATTAGACGCGAAGGATAATGCCCGGCGCGGCTATCCGCAGCCGAAAGCACTGGAAGCCGCCTATTAA

Upstream 100 bases:

>100_bases
ATTGCCGAAGTCGGGGACGACCCTTCGGTATGGCTTCCGGTGTTCCAGGAGCACCGGAAAGCACGCATTGCGTCGTCCAA
ATCAACAGGAAGGTGACACT

Downstream 100 bases:

>100_bases
CTACCCGACTAAGGAGTAGATCACGCAACACATCATCTACACCGTTTTTACTGCTAGCGATAGGGTGCAAGCCTCTTTGC
CATATCCATAATCATATTTG

Product: P-type DNA transfer protein VirB5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MKKIILSFAFALTVTSTAHAQLPVTDAGSIAQNLANHLEQMVKFAQQIEQLKQQFEEQKMQFDALTGNRGLGDILRNPTL
RSYLPHNWRDLYEAVMSGGYLAAAGETANLLRKSQVYDPCASISDKDQRIACEAKVVKPVQDKVMTSKAYDATDKRLQEI
ESLMQEINKTGDPKAIAELQGRIESENAMIQNEDTRLHLYQQMAEAQDKLLDERQHELDAKDNARRGYPQPKALEAAY

Sequences:

>Translated_238_residues
MKKIILSFAFALTVTSTAHAQLPVTDAGSIAQNLANHLEQMVKFAQQIEQLKQQFEEQKMQFDALTGNRGLGDILRNPTL
RSYLPHNWRDLYEAVMSGGYLAAAGETANLLRKSQVYDPCASISDKDQRIACEAKVVKPVQDKVMTSKAYDATDKRLQEI
ESLMQEINKTGDPKAIAELQGRIESENAMIQNEDTRLHLYQQMAEAQDKLLDERQHELDAKDNARRGYPQPKALEAAY
>Mature_238_residues
MKKIILSFAFALTVTSTAHAQLPVTDAGSIAQNLANHLEQMVKFAQQIEQLKQQFEEQKMQFDALTGNRGLGDILRNPTL
RSYLPHNWRDLYEAVMSGGYLAAAGETANLLRKSQVYDPCASISDKDQRIACEAKVVKPVQDKVMTSKAYDATDKRLQEI
ESLMQEINKTGDPKAIAELQGRIESENAMIQNEDTRLHLYQQMAEAQDKLLDERQHELDAKDNARRGYPQPKALEAAY

Specific function: The virB operon is essential for intracellular survival and is not involved in the invasion process. Constitutes a major determinant of virulence in mice [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virb5 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012991
- InterPro:   IPR014158
- InterPro:   IPR023220 [H]

Pfam domain/function: PF07996 T4SS [H]

EC number: NA

Molecular weight: Translated: 26811; Mature: 26811

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIILSFAFALTVTSTAHAQLPVTDAGSIAQNLANHLEQMVKFAQQIEQLKQQFEEQKM
CHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QFDALTGNRGLGDILRNPTLRSYLPHNWRDLYEAVMSGGYLAAAGETANLLRKSQVYDPC
HHHHCCCCCCHHHHHCCCCHHHHCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCHH
ASISDKDQRIACEAKVVKPVQDKVMTSKAYDATDKRLQEIESLMQEINKTGDPKAIAELQ
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
GRIESENAMIQNEDTRLHLYQQMAEAQDKLLDERQHELDAKDNARRGYPQPKALEAAY
HHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKIILSFAFALTVTSTAHAQLPVTDAGSIAQNLANHLEQMVKFAQQIEQLKQQFEEQKM
CHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QFDALTGNRGLGDILRNPTLRSYLPHNWRDLYEAVMSGGYLAAAGETANLLRKSQVYDPC
HHHHCCCCCCHHHHHCCCCHHHHCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCHH
ASISDKDQRIACEAKVVKPVQDKVMTSKAYDATDKRLQEIESLMQEINKTGDPKAIAELQ
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
GRIESENAMIQNEDTRLHLYQQMAEAQDKLLDERQHELDAKDNARRGYPQPKALEAAY
HHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10940027 [H]