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The map label for this gene is 162447017

Identifier: 162447017

GI number: 162447017

Start: 132823

End: 133320

Strand: Direct

Name: 162447017

Synonym: ACL_0147

Alternate gene names: NA

Gene position: 132823-133320 (Clockwise)

Preceding gene: 162447016

Following gene: 162447018

Centisome position: 8.87

GC content: 26.51

Gene sequence:

>498_bases
ATGTATAAGAATGATTATGAACTCATCTACTTATATCGAACGACAAAATCCGAAGAAGTGATTTCCATAATCTTTCAAAA
ATACAAACCACTTATTTTGAAAAACATCTATAAATTTTATATACCAAGTAAAGATCATGATGATTTTTTTCAAGAATCAT
TAATGACCTTATTGGATTGTATCCACACCTTTGATGAATCAAAAAACAAAACTTTTACAAAGTATTTTGAACTTGTCTTA
TACCGTAAGTTTATTACCTTAAAAGACAAGTCTTCAAAATATGTTTTAATTGAAAAACCAGAGCTCATCAAAGAAAGTTA
CACGCCAAATTATGAAGTGACTAATATAGATAATCTTTATTTATCACCACTAGAAAAACACATATATACAATGTACTTTG
AAGATAAACTTACGATTGATACGATTGCCTTAAACTTAAATAAAACTCAAAAAAGTATAAAAAATGCGGTTTACCGTATA
AAAGTCAAACTAAAGTAG

Upstream 100 bases:

>100_bases
TGACTTATTAGTATCGATTCCAATGCTTGGTAAAGTAAACAGTTTAAATGTGAGTGTAGCAACCGCGCTACTCTTATATG
AAACAATTTAGGTAAGTGCT

Downstream 100 bases:

>100_bases
TTAATAGTTGTTATAATAGAGTTGAAATAAGCTTTTAGGGGGACTAAATGAATAATCAAAGAAAACTCAAATACGGTACA
ATTGTATTTGTACTAAGTAT

Product: ECF subfamily RNA polymerase sigma-70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MYKNDYELIYLYRTTKSEEVISIIFQKYKPLILKNIYKFYIPSKDHDDFFQESLMTLLDCIHTFDESKNKTFTKYFELVL
YRKFITLKDKSSKYVLIEKPELIKESYTPNYEVTNIDNLYLSPLEKHIYTMYFEDKLTIDTIALNLNKTQKSIKNAVYRI
KVKLK

Sequences:

>Translated_165_residues
MYKNDYELIYLYRTTKSEEVISIIFQKYKPLILKNIYKFYIPSKDHDDFFQESLMTLLDCIHTFDESKNKTFTKYFELVL
YRKFITLKDKSSKYVLIEKPELIKESYTPNYEVTNIDNLYLSPLEKHIYTMYFEDKLTIDTIALNLNKTQKSIKNAVYRI
KVKLK
>Mature_165_residues
MYKNDYELIYLYRTTKSEEVISIIFQKYKPLILKNIYKFYIPSKDHDDFFQESLMTLLDCIHTFDESKNKTFTKYFELVL
YRKFITLKDKSSKYVLIEKPELIKESYTPNYEVTNIDNLYLSPLEKHIYTMYFEDKLTIDTIALNLNKTQKSIKNAVYRI
KVKLK

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20000; Mature: 20000

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKNDYELIYLYRTTKSEEVISIIFQKYKPLILKNIYKFYIPSKDHDDFFQESLMTLLDC
CCCCCEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
IHTFDESKNKTFTKYFELVLYRKFITLKDKSSKYVLIEKPELIKESYTPNYEVTNIDNLY
HHHHCCCCCCHHHHHHHHHHHHHHHEEECCCCCEEEEECCHHHHHCCCCCEEECCCCCHH
LSPLEKHIYTMYFEDKLTIDTIALNLNKTQKSIKNAVYRIKVKLK
HCHHHHHEEEEEECCCEEEEEEEEECCHHHHHHHHCEEEEEEEEC
>Mature Secondary Structure
MYKNDYELIYLYRTTKSEEVISIIFQKYKPLILKNIYKFYIPSKDHDDFFQESLMTLLDC
CCCCCEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
IHTFDESKNKTFTKYFELVLYRKFITLKDKSSKYVLIEKPELIKESYTPNYEVTNIDNLY
HHHHCCCCCCHHHHHHHHHHHHHHHEEECCCCCEEEEECCHHHHHCCCCCEEECCCCCHH
LSPLEKHIYTMYFEDKLTIDTIALNLNKTQKSIKNAVYRIKVKLK
HCHHHHHEEEEEECCCEEEEEEEEECCHHHHHHHHCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA