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The map label for this gene is secY [H]

Identifier: 162446977

GI number: 162446977

Start: 93220

End: 94518

Strand: Direct

Name: secY [H]

Synonym: ACL_0107

Alternate gene names: 162446977

Gene position: 93220-94518 (Clockwise)

Preceding gene: 162446976

Following gene: 162446978

Centisome position: 6.23

GC content: 35.18

Gene sequence:

>1299_bases
ATGTGGCAGCGCATAAAAAATGTATTAGCAAATAATTCAGTTATGGCTCGTGTGGGTATAACGTTATTACTTATCTTCAT
ATTTAGAGTCGCAAGTTACATCCCAATTCCATTGTTTAACATTGAACTTTTCAGAAGCAATCAAACATGGTCATCAGGAT
TCTTAGGTATTTTAAATAGCTATACAGGACAAGCATTGGCACGTTTTAGTGTGTTATCTCTAGGGATTTCACCTTATATC
ACTGCATCTATTGCAGTACAATTATTACAAACAGTTGTTCCTTCTATGAAAGAGTGGCAAGAACAAGGTGATACTGGGAA
AGTTAAAACTCAACGTATGACTAAGTACTTAGCAATCGTATTAGCGTTTGCTCAAAGTTTACTCTTAATTTTAGGTACAG
GTGTTAGAGGCTCACAAATTCAAGTGGGCGTAGATAGTGGATTCTTTACTTACTTTTATATGGCTTTAGTTGTAACTGCA
GGTTCTGCATTTGCAATTTGGCTAGCTGATCTAATTACAGCTAAAGGTGTTGGTAATGGTTCATCTATATTAATTGGTGT
GGGTGTGTTAACATCTATTCCAATTATGATCACAACTTTAAGTGATAAATACTTAGGTACAGGTGAATGGACTGACATCT
TAATCTATGTATTAATTCTATTACTTTATGTAGGTATTTTATTAGGTGTTGTTTATATGAACATCGCTAAACGTAAGATT
CCTATAAACTATGCAAATAGACAAGGTGGTAAAACAAGAACAGATTCAAATATCCCATTAAAGATTAACTCTGCTGGGGT
ATTACCTGTAATCTTCGCATCAACCATCCTATCAGTTCCACTTTCTATTGTTGGTTTCTTAGAAGGCAGTTTAGGTGCAG
GAACTCAAAGTTGGATCAATGCAATCTTCAATTACCAAGAACCACTTGGATTCATTATTTATCTTATCTTAATCATTGCA
TTCTCATTCTTCTATACATTCATGGTAACAAATCCACATAAGATTGCTGATAACTTATCAAAATCTAATGCATATGTTCC
AGGTGTAAGACCAGGAGATGATACTAAAAACTATATTGCTAGAATTCTATTTAAAGTCACAGTTATTGGTACAGTATACT
TAGTTGTATTAGCTGCACTTCCAATTATTACTGCATGGGTATTCGGCTTTGTAGGTGCAGAAGCTGCAAGCATCACCTTA
GGTGGAACCGGGCTATTAATCGTAGTTGGGGTTGCTGCAGACACTACACAACAACTTGAAGCACAAGCTAATCAAGAGAC
GTATCAAGGATTGTTCTAA

Upstream 100 bases:

>100_bases
GGAAAGTTAGAGAAAAAGCTAACTGTTAAAGCAAACAAATTCTCAAACAGTGCTAAAGAAGCAATTGAAGCAGCTGGTGG
AACAATCGAGGTGATCTAAA

Downstream 100 bases:

>100_bases
TGAAAACAAGGATGATATTTGTAGGCCCTCCTGGGGCTGGCAAGGGATCACAGGCAAAAATAATTTCACAGACATTAAAT
ATCCCACATATATCAACCGG

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MWQRIKNVLANNSVMARVGITLLLIFIFRVASYIPIPLFNIELFRSNQTWSSGFLGILNSYTGQALARFSVLSLGISPYI
TASIAVQLLQTVVPSMKEWQEQGDTGKVKTQRMTKYLAIVLAFAQSLLLILGTGVRGSQIQVGVDSGFFTYFYMALVVTA
GSAFAIWLADLITAKGVGNGSSILIGVGVLTSIPIMITTLSDKYLGTGEWTDILIYVLILLLYVGILLGVVYMNIAKRKI
PINYANRQGGKTRTDSNIPLKINSAGVLPVIFASTILSVPLSIVGFLEGSLGAGTQSWINAIFNYQEPLGFIIYLILIIA
FSFFYTFMVTNPHKIADNLSKSNAYVPGVRPGDDTKNYIARILFKVTVIGTVYLVVLAALPIITAWVFGFVGAEAASITL
GGTGLLIVVGVAADTTQQLEAQANQETYQGLF

Sequences:

>Translated_432_residues
MWQRIKNVLANNSVMARVGITLLLIFIFRVASYIPIPLFNIELFRSNQTWSSGFLGILNSYTGQALARFSVLSLGISPYI
TASIAVQLLQTVVPSMKEWQEQGDTGKVKTQRMTKYLAIVLAFAQSLLLILGTGVRGSQIQVGVDSGFFTYFYMALVVTA
GSAFAIWLADLITAKGVGNGSSILIGVGVLTSIPIMITTLSDKYLGTGEWTDILIYVLILLLYVGILLGVVYMNIAKRKI
PINYANRQGGKTRTDSNIPLKINSAGVLPVIFASTILSVPLSIVGFLEGSLGAGTQSWINAIFNYQEPLGFIIYLILIIA
FSFFYTFMVTNPHKIADNLSKSNAYVPGVRPGDDTKNYIARILFKVTVIGTVYLVVLAALPIITAWVFGFVGAEAASITL
GGTGLLIVVGVAADTTQQLEAQANQETYQGLF
>Mature_432_residues
MWQRIKNVLANNSVMARVGITLLLIFIFRVASYIPIPLFNIELFRSNQTWSSGFLGILNSYTGQALARFSVLSLGISPYI
TASIAVQLLQTVVPSMKEWQEQGDTGKVKTQRMTKYLAIVLAFAQSLLLILGTGVRGSQIQVGVDSGFFTYFYMALVVTA
GSAFAIWLADLITAKGVGNGSSILIGVGVLTSIPIMITTLSDKYLGTGEWTDILIYVLILLLYVGILLGVVYMNIAKRKI
PINYANRQGGKTRTDSNIPLKINSAGVLPVIFASTILSVPLSIVGFLEGSLGAGTQSWINAIFNYQEPLGFIIYLILIIA
FSFFYTFMVTNPHKIADNLSKSNAYVPGVRPGDDTKNYIARILFKVTVIGTVYLVVLAALPIITAWVFGFVGAEAASITL
GGTGLLIVVGVAADTTQQLEAQANQETYQGLF

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=411, Percent_Identity=34.5498783454988, Blast_Score=197, Evalue=8e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 46774; Mature: 46774

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWQRIKNVLANNSVMARVGITLLLIFIFRVASYIPIPLFNIELFRSNQTWSSGFLGILNS
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHH
YTGQALARFSVLSLGISPYITASIAVQLLQTVVPSMKEWQEQGDTGKVKTQRMTKYLAIV
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LAFAQSLLLILGTGVRGSQIQVGVDSGFFTYFYMALVVTAGSAFAIWLADLITAKGVGNG
HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
SSILIGVGVLTSIPIMITTLSDKYLGTGEWTDILIYVLILLLYVGILLGVVYMNIAKRKI
CEEEEEHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PINYANRQGGKTRTDSNIPLKINSAGVLPVIFASTILSVPLSIVGFLEGSLGAGTQSWIN
CCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
AIFNYQEPLGFIIYLILIIAFSFFYTFMVTNPHKIADNLSKSNAYVPGVRPGDDTKNYIA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHH
RILFKVTVIGTVYLVVLAALPIITAWVFGFVGAEAASITLGGTGLLIVVGVAADTTQQLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCHHHHH
AQANQETYQGLF
HHHCHHHHCCCC
>Mature Secondary Structure
MWQRIKNVLANNSVMARVGITLLLIFIFRVASYIPIPLFNIELFRSNQTWSSGFLGILNS
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHH
YTGQALARFSVLSLGISPYITASIAVQLLQTVVPSMKEWQEQGDTGKVKTQRMTKYLAIV
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LAFAQSLLLILGTGVRGSQIQVGVDSGFFTYFYMALVVTAGSAFAIWLADLITAKGVGNG
HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
SSILIGVGVLTSIPIMITTLSDKYLGTGEWTDILIYVLILLLYVGILLGVVYMNIAKRKI
CEEEEEHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PINYANRQGGKTRTDSNIPLKINSAGVLPVIFASTILSVPLSIVGFLEGSLGAGTQSWIN
CCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
AIFNYQEPLGFIIYLILIIAFSFFYTFMVTNPHKIADNLSKSNAYVPGVRPGDDTKNYIA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHH
RILFKVTVIGTVYLVVLAALPIITAWVFGFVGAEAASITLGGTGLLIVVGVAADTTQQLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCHHHHH
AQANQETYQGLF
HHHCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1435726 [H]