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The map label for this gene is araQ [H]

Identifier: 162446924

GI number: 162446924

Start: 44453

End: 45331

Strand: Direct

Name: araQ [H]

Synonym: ACL_0038

Alternate gene names: 162446924

Gene position: 44453-45331 (Clockwise)

Preceding gene: 162446923

Following gene: 162446925

Centisome position: 2.97

GC content: 29.92

Gene sequence:

>879_bases
ATGAACAAATCATTTAATTTAAAAAAGATGCGTTTTGTTGATAAGCTCCCTTTATATTTTCTTAAATTCTTTATCTACTT
TATTTTAGGTGTGTTTGCATTTGTAATTATCTTCTTATTCTATACATTGTTTGTAAATGCATCAAGACCACACATTGATA
TTTCTAAGGGGTTTTCAATATTTCCGGGTTCATTTTTTATTAGAAACTTAAATAAAATCCTAACTCAAGAAAACCTATTT
GTTATAGAAGGTATTAGAAATAGTTTCTTTATAGCCTTTGTATCTGGGATACTTACAACATACTTTAGTGCATTAACAGC
TTATGCAATACATCTATATAAATTTAAAGGAAATAGATTTATCCATCTAGCGATATTAGCGGTTATGATGATTCCATCAC
AAATCGCCGGTATCGGGTTAGTAACGATATTATATAGTATAGGATTTGTAAATAATTACTGGGTAATCATCATACCCGCA
ATTGCATCACCAGCGACATTCTTTTTCATGAAACAATACATTCAAAGTGTATTACCTTATGAGATTATTGAAGCTGCACG
TGTTGATGGATCAAGTGAATTTAGAACGTTTAATCAAATTGTACTTCCAATTATTAAACCAGCTTTATCCGTTCAATTTA
TCTTTGCTTTTGTAGCAAGTTGGAACAACTTATTCATACCATCTTTAATTATTCAAGATGGTAATAAAAGAACGTTGCCA
ATTATAATTGCTCAACTGGGTGTATCTGATCCGAAAAACTTTGATCAAGGTGCTCGATTTATGCTTATGTTTCTAGCAAT
TATTCCAACAGTGATCATATATCTGATTTTTTCTAAATATATTATAAAAGGTACTACAGCAGGTAGTGTGAAAGGTTAA

Upstream 100 bases:

>100_bases
TTCTTACAACGATTATTAGCTTATTATTCTTCTTTATCATGAATAAAGATGAAATTAAAGAATACCGTGAAGAGAAGAGA
ATAAGAAAGGAGATGAAAAG

Downstream 100 bases:

>100_bases
TAAAGGACAATACTTATGAAATATGGCTATTTTGATGATTTAAATAAAGAATACGTGATAACAACACCTTACACACCCTA
TCCTTGGATAAACTATCTAG

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MNKSFNLKKMRFVDKLPLYFLKFFIYFILGVFAFVIIFLFYTLFVNASRPHIDISKGFSIFPGSFFIRNLNKILTQENLF
VIEGIRNSFFIAFVSGILTTYFSALTAYAIHLYKFKGNRFIHLAILAVMMIPSQIAGIGLVTILYSIGFVNNYWVIIIPA
IASPATFFFMKQYIQSVLPYEIIEAARVDGSSEFRTFNQIVLPIIKPALSVQFIFAFVASWNNLFIPSLIIQDGNKRTLP
IIIAQLGVSDPKNFDQGARFMLMFLAIIPTVIIYLIFSKYIIKGTTAGSVKG

Sequences:

>Translated_292_residues
MNKSFNLKKMRFVDKLPLYFLKFFIYFILGVFAFVIIFLFYTLFVNASRPHIDISKGFSIFPGSFFIRNLNKILTQENLF
VIEGIRNSFFIAFVSGILTTYFSALTAYAIHLYKFKGNRFIHLAILAVMMIPSQIAGIGLVTILYSIGFVNNYWVIIIPA
IASPATFFFMKQYIQSVLPYEIIEAARVDGSSEFRTFNQIVLPIIKPALSVQFIFAFVASWNNLFIPSLIIQDGNKRTLP
IIIAQLGVSDPKNFDQGARFMLMFLAIIPTVIIYLIFSKYIIKGTTAGSVKG
>Mature_292_residues
MNKSFNLKKMRFVDKLPLYFLKFFIYFILGVFAFVIIFLFYTLFVNASRPHIDISKGFSIFPGSFFIRNLNKILTQENLF
VIEGIRNSFFIAFVSGILTTYFSALTAYAIHLYKFKGNRFIHLAILAVMMIPSQIAGIGLVTILYSIGFVNNYWVIIIPA
IASPATFFFMKQYIQSVLPYEIIEAARVDGSSEFRTFNQIVLPIIKPALSVQFIFAFVASWNNLFIPSLIIQDGNKRTLP
IIIAQLGVSDPKNFDQGARFMLMFLAIIPTVIIYLIFSKYIIKGTTAGSVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=264, Percent_Identity=27.6515151515151, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787571, Length=270, Percent_Identity=25.1851851851852, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790464, Length=252, Percent_Identity=25, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787368, Length=222, Percent_Identity=25.2252252252252, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33189; Mature: 33189

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSFNLKKMRFVDKLPLYFLKFFIYFILGVFAFVIIFLFYTLFVNASRPHIDISKGFSI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCC
FPGSFFIRNLNKILTQENLFVIEGIRNSFFIAFVSGILTTYFSALTAYAIHLYKFKGNRF
CCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCC
IHLAILAVMMIPSQIAGIGLVTILYSIGFVNNYWVIIIPAIASPATFFFMKQYIQSVLPY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCH
EIIEAARVDGSSEFRTFNQIVLPIIKPALSVQFIFAFVASWNNLFIPSLIIQDGNKRTLP
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEECCCCCCHH
IIIAQLGVSDPKNFDQGARFMLMFLAIIPTVIIYLIFSKYIIKGTTAGSVKG
HHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNKSFNLKKMRFVDKLPLYFLKFFIYFILGVFAFVIIFLFYTLFVNASRPHIDISKGFSI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCC
FPGSFFIRNLNKILTQENLFVIEGIRNSFFIAFVSGILTTYFSALTAYAIHLYKFKGNRF
CCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCC
IHLAILAVMMIPSQIAGIGLVTILYSIGFVNNYWVIIIPAIASPATFFFMKQYIQSVLPY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCH
EIIEAARVDGSSEFRTFNQIVLPIIKPALSVQFIFAFVASWNNLFIPSLIIQDGNKRTLP
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEECCCCCCHH
IIIAQLGVSDPKNFDQGARFMLMFLAIIPTVIIYLIFSKYIIKGTTAGSVKG
HHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]