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The map label for this gene is yfjD [H]

Identifier: 162421803

GI number: 162421803

Start: 909039

End: 909767

Strand: Direct

Name: yfjD [H]

Synonym: YpAngola_A0886

Alternate gene names: 162421803

Gene position: 909039-909767 (Clockwise)

Preceding gene: 162421676

Following gene: 162420442

Centisome position: 20.18

GC content: 46.91

Gene sequence:

>729_bases
TTGGAGCACGTATCAACTAGCTCATTGATCATTATCTTAGTCATTATGATCATCGTTTCAGCTTACTTCTCTGCATCCGA
AACCGGCATGATGACACTTAACCGGTATCGGATGCGTCACTTATCCAAACAAGGCAACCGTGCCGCACGTCGGGTGGAAA
AGCTCCTGAACCGCCCAGATCGCCTAATAAGTTTGGTACTGATTGGCAATAATCTGGTTAACATACTGGCATCTGCGCTG
GCGACGATTGTCGGTATTCGTTTATACGGTGATGCCGGAGTTGCCATCGCAACCGGGGTGCTAACTTTTGTGATCCTGAT
TTTTGCTGAAGTCCTGCCAAAAACTATCGCTGCCCTTTATCCTGAACGTGTCGCATTCCCTAGCAGTATGCTCCTGGCCC
CCCTGCAAAAGATCATGCTGCCACTCGTGTGGCTACTGAATACCATTACTCGCGGGTTGATGCATTTATGTGGCATTAGA
GGAAATGTGCACAGCAGTGATGCGATGAGTAAAGATGAATTACGCACGATAGTGAGTGAGTCCCAATCAAAAATCTCTCG
CCGCAATCAAGACATGTTGATTTCAGTATTAGATCTGGAGAAAGTGACTGTCAGCGATATCATGGTACCGCGTAATGAAG
TCGTCGGTATCGATATTAATGATGATTGGAAGTCAATCATGCGCCAGCTTACACACTCGCCCCATGTGTCAACGACGGAT
GAAAAGTGA

Upstream 100 bases:

>100_bases
GTCTGGTCCAGGAAATTATGGTTCGCTAGTGATTACCGCAACCACCTACACAAGGCCCAACGGAACTGGCTGAGGCCTCA
TCACGATAAGGAATACTGTG

Downstream 100 bases:

>100_bases
TCCACTTATATCTCCACCAACGGCCCAATATTGATCCACCGTTTTACTCAGGATTAGCTTCTGCTATAACCCCGGCCTTT
CGTTTCTGTCTGAGTCGATA

Product: putative membrane protein, truncation

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MEHVSTSSLIIILVIMIIVSAYFSASETGMMTLNRYRMRHLSKQGNRAARRVEKLLNRPDRLISLVLIGNNLVNILASAL
ATIVGIRLYGDAGVAIATGVLTFVILIFAEVLPKTIAALYPERVAFPSSMLLAPLQKIMLPLVWLLNTITRGLMHLCGIR
GNVHSSDAMSKDELRTIVSESQSKISRRNQDMLISVLDLEKVTVSDIMVPRNEVVGIDINDDWKSIMRQLTHSPHVSTTD
EK

Sequences:

>Translated_242_residues
MEHVSTSSLIIILVIMIIVSAYFSASETGMMTLNRYRMRHLSKQGNRAARRVEKLLNRPDRLISLVLIGNNLVNILASAL
ATIVGIRLYGDAGVAIATGVLTFVILIFAEVLPKTIAALYPERVAFPSSMLLAPLQKIMLPLVWLLNTITRGLMHLCGIR
GNVHSSDAMSKDELRTIVSESQSKISRRNQDMLISVLDLEKVTVSDIMVPRNEVVGIDINDDWKSIMRQLTHSPHVSTTD
EK
>Mature_242_residues
MEHVSTSSLIIILVIMIIVSAYFSASETGMMTLNRYRMRHLSKQGNRAARRVEKLLNRPDRLISLVLIGNNLVNILASAL
ATIVGIRLYGDAGVAIATGVLTFVILIFAEVLPKTIAALYPERVAFPSSMLLAPLQKIMLPLVWLLNTITRGLMHLCGIR
GNVHSSDAMSKDELRTIVSESQSKISRRNQDMLISVLDLEKVTVSDIMVPRNEVVGIDINDDWKSIMRQLTHSPHVSTTD
EK

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=209, Percent_Identity=24.4019138755981, Blast_Score=77, Evalue=1e-14,
Organism=Escherichia coli, GI145693175, Length=235, Percent_Identity=78.2978723404255, Blast_Score=365, Evalue=1e-102,
Organism=Escherichia coli, GI1790664, Length=243, Percent_Identity=25.5144032921811, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 26872; Mature: 26872

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHVSTSSLIIILVIMIIVSAYFSASETGMMTLNRYRMRHLSKQGNRAARRVEKLLNRPD
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHH
RLISLVLIGNNLVNILASALATIVGIRLYGDAGVAIATGVLTFVILIFAEVLPKTIAALY
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
PERVAFPSSMLLAPLQKIMLPLVWLLNTITRGLMHLCGIRGNVHSSDAMSKDELRTIVSE
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
SQSKISRRNQDMLISVLDLEKVTVSDIMVPRNEVVGIDINDDWKSIMRQLTHSPHVSTTD
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCC
EK
CC
>Mature Secondary Structure
MEHVSTSSLIIILVIMIIVSAYFSASETGMMTLNRYRMRHLSKQGNRAARRVEKLLNRPD
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHH
RLISLVLIGNNLVNILASALATIVGIRLYGDAGVAIATGVLTFVILIFAEVLPKTIAALY
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
PERVAFPSSMLLAPLQKIMLPLVWLLNTITRGLMHLCGIRGNVHSSDAMSKDELRTIVSE
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
SQSKISRRNQDMLISVLDLEKVTVSDIMVPRNEVVGIDINDDWKSIMRQLTHSPHVSTTD
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCC
EK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]