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The map label for this gene is yfjD [H]

Identifier: 162420442

GI number: 162420442

Start: 911682

End: 912278

Strand: Direct

Name: yfjD [H]

Synonym: YpAngola_A0889

Alternate gene names: 162420442

Gene position: 911682-912278 (Clockwise)

Preceding gene: 162421803

Following gene: 162419940

Centisome position: 20.24

GC content: 45.73

Gene sequence:

>597_bases
TTGCACCGTTCGTTACACCATGGTCGCATTGTGTTATATCGCCAGTCCTTGGATGACGCTATTGGCATGCTACGTGTGCG
GGAAGCCTATCGGTTGATGACGGAGAAAAAGGAATTTAATAAAGAGAACCTACTGCGTGCAGCCGATGAAATCTACTTTA
TCCCCGAAGGCACGCCACTCAATGTACAACTGGTGAAATTCCAACGTAATAAAAAGAAAGTCGGCATGATTGTCGATGAA
TATGGTGATATTCAAGGTTTAGTGACAGTTGAAGATATTCTGGAGGAGATCGTGGGGGATTTTACCACCTCAATGTCCCC
TACGCTTGCGGAAGAAGTTAATCCACAGAGCGACGGCTCGGTACTGATTGATGGCAGTGCCAGCGTCCGCGAAGTGAACA
AAGCCTTTAACTGGTCATTACCCGTCGATGCCCGCACCATCAATGGCATGTTGCTGGAAGAGCTAGAAGAAATTCCGCAA
GCACATATTCACGTCCGTCTTGGAAATTACCAAATTGAAGTACTTGATGTGCAGGAAAATATGATTAAGCGGGTTAAAAT
TACCCCAATGACTTCCGCAGAACATTCGACCCTATAA

Upstream 100 bases:

>100_bases
TAATTTCCATAACTGTCTCAAAAGTGACCATAAACTCTCCTGAATCAGGAGAGCAGATTACCCCCTGGATCTGATTTCAG
GCGTTGGGTGTGGATCACTA

Downstream 100 bases:

>100_bases
ATAATTCTGTCTAAGCGATAGTCAGTTTAATAAAAAAGACGCTTTAATCAGCGCCTTTTATCATTCTCCTGCCTACTGAT
ACTGAGCACTAAATATGCAA

Product: inner membrane protein YfjD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MHRSLHHGRIVLYRQSLDDAIGMLRVREAYRLMTEKKEFNKENLLRAADEIYFIPEGTPLNVQLVKFQRNKKKVGMIVDE
YGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVNPQSDGSVLIDGSASVREVNKAFNWSLPVDARTINGMLLEELEEIPQ
AHIHVRLGNYQIEVLDVQENMIKRVKITPMTSAEHSTL

Sequences:

>Translated_198_residues
MHRSLHHGRIVLYRQSLDDAIGMLRVREAYRLMTEKKEFNKENLLRAADEIYFIPEGTPLNVQLVKFQRNKKKVGMIVDE
YGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVNPQSDGSVLIDGSASVREVNKAFNWSLPVDARTINGMLLEELEEIPQ
AHIHVRLGNYQIEVLDVQENMIKRVKITPMTSAEHSTL
>Mature_198_residues
MHRSLHHGRIVLYRQSLDDAIGMLRVREAYRLMTEKKEFNKENLLRAADEIYFIPEGTPLNVQLVKFQRNKKKVGMIVDE
YGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVNPQSDGSVLIDGSASVREVNKAFNWSLPVDARTINGMLLEELEEIPQ
AHIHVRLGNYQIEVLDVQENMIKRVKITPMTSAEHSTL

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Escherichia coli, GI145693175, Length=191, Percent_Identity=76.4397905759162, Blast_Score=307, Evalue=4e-85,
Organism=Escherichia coli, GI87082033, Length=190, Percent_Identity=27.3684210526316, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1786879, Length=170, Percent_Identity=24.7058823529412, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 22531; Mature: 22531

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRSLHHGRIVLYRQSLDDAIGMLRVREAYRLMTEKKEFNKENLLRAADEIYFIPEGTPL
CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEECCCCCCC
NVQLVKFQRNKKKVGMIVDEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVNPQSDGS
EEEEEEEECCCCCCCEEEECCCCCCEEEEHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCC
VLIDGSASVREVNKAFNWSLPVDARTINGMLLEELEEIPQAHIHVRLGNYQIEVLDVQEN
EEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCEEEEEEECCHH
MIKRVKITPMTSAEHSTL
HHHEEEECCCCCCCCCCC
>Mature Secondary Structure
MHRSLHHGRIVLYRQSLDDAIGMLRVREAYRLMTEKKEFNKENLLRAADEIYFIPEGTPL
CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEECCCCCCC
NVQLVKFQRNKKKVGMIVDEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVNPQSDGS
EEEEEEEECCCCCCCEEEECCCCCCEEEEHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCC
VLIDGSASVREVNKAFNWSLPVDARTINGMLLEELEEIPQAHIHVRLGNYQIEVLDVQEN
EEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCEEEEEEECCHH
MIKRVKITPMTSAEHSTL
HHHEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]