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The map label for this gene is quuD [H]

Identifier: 162419353

GI number: 162419353

Start: 2276755

End: 2276976

Strand: Direct

Name: quuD [H]

Synonym: YpAngola_A2176

Alternate gene names: 162419353

Gene position: 2276755-2276976 (Clockwise)

Preceding gene: 162418134

Following gene: 162419766

Centisome position: 50.55

GC content: 42.34

Gene sequence:

>222_bases
ATGGCTGGATTAAACAGTAAGCATCCAGTCGTTCATAGCTTGTTGTTTGATTATTACGTATTTGGCAAAACATTTATGCA
GCTATCGAAAGAGCATCACTGCTCTGATACTCACATTGGCAAAAAGCTACAGAACGCCGAAGGGGTTATTGACGGCTACC
TGATGGCATTAGAAGTAAAGCTCGAAATGGATAAACAAGTCAGGCGGGAGTTAGCAGCTTGA

Upstream 100 bases:

>100_bases
TTGGCCCCCAATCGCAGCCGGATTTTCTGGACTGATACCATCAAAAGTAAAAAGCCGAACTCAATGTTGTGACGAGGATG
GGCTAATTATTTCGGGCATT

Downstream 100 bases:

>100_bases
CGATTGACGGTATTCGGGGCTATATTTCCTGTACACCTGCAAAATCAGGTGTCGGGATTTGCACCCTGGATATCACAACA
ACGCATAGCCGCGTTTGCGG

Product: antitermination protein Q

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 73; Mature: 72

Protein sequence:

>73_residues
MAGLNSKHPVVHSLLFDYYVFGKTFMQLSKEHHCSDTHIGKKLQNAEGVIDGYLMALEVKLEMDKQVRRELAA

Sequences:

>Translated_73_residues
MAGLNSKHPVVHSLLFDYYVFGKTFMQLSKEHHCSDTHIGKKLQNAEGVIDGYLMALEVKLEMDKQVRRELAA
>Mature_72_residues
AGLNSKHPVVHSLLFDYYVFGKTFMQLSKEHHCSDTHIGKKLQNAEGVIDGYLMALEVKLEMDKQVRRELAA

Specific function: Positively regulate expression of some phage genes. Bacterial host RNA polymerase modified by antitermination proteins transcribes through termination sites that otherwise prevent expression of the regulated genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage antitermination Q type 1 family [H]

Homologues:

Organism=Escherichia coli, GI1786763, Length=64, Percent_Identity=57.8125, Blast_Score=82, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010534 [H]

Pfam domain/function: PF06530 Phage_antitermQ [H]

EC number: NA

Molecular weight: Translated: 8319; Mature: 8188

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGLNSKHPVVHSLLFDYYVFGKTFMQLSKEHHCSDTHIGKKLQNAEGVIDGYLMALEVK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
LEMDKQVRRELAA
HHHHHHHHHHHCC
>Mature Secondary Structure 
AGLNSKHPVVHSLLFDYYVFGKTFMQLSKEHHCSDTHIGKKLQNAEGVIDGYLMALEVK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
LEMDKQVRRELAA
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8648624; 9278503 [H]