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The map label for this gene is rfbE [H]

Identifier: 162148994

GI number: 162148994

Start: 3315643

End: 3316389

Strand: Direct

Name: rfbE [H]

Synonym: GDI_3224

Alternate gene names: 162148994

Gene position: 3315643-3316389 (Clockwise)

Preceding gene: 162148993

Following gene: 162148999

Centisome position: 84.06

GC content: 65.19

Gene sequence:

>747_bases
ATGGCTGAAATCATACTGGACCACGCGTGTGTCGAATTTTCGATCTACAACGCACGCAGCCGCTCCCTGCGCAACGACCT
GATGAAGCGGGTGGGCGGCCATCTCGGCGGGTCCCCCAAGGATGACCGGGTCGTGGTCCACGCCCTGCGCGACATCAACC
TGCATCTGCAGGCCGGAACGCGCCTGGCCCTTGTCGGGCATAACGGCGCGGGCAAATCGACCATGCTGCGCCTGCTCAGC
GGCGTGTACGAGCCCTCGGCCGGGCGGGCCGTCATCACGGGGAAGGTGTCGTCGCTGCTGGACCTGTCGATGGGCATGGA
CGTCGAGCAGACCGGGCGCGACAACATCATCCTGCGCGCGGTCTTCCTGGGCATGACCTTCACCCAGGCCAAGGCGCTGG
TCCCTGAAATCGCTGAATTTTCGGAATTGGGTCCCTATCTGGACCTGCCGATGCGGACCTATTCCAGCGGCATGGCCATG
CGGCTGGGGTTCGGGGTGTCGACGGCGATCCAGCCCGACATCCTGCTGATGGATGAAATGATATCGGTCGGCGACGTCCG
CTTCGCCGCCAAGGCGAAGGCCCGGCTGCAGAAGCTGATGGAACAGGCGCGGATCTGGTCATCGCCTCGCACCATTTCCG
AGACGCTGCGGGAATATTGCGACCGGGCGGTATGGCTCCAGGAGGGCCGCATCGTCGCGGACGGCCCGCTGGAAGACATC
CTGGCGCGCGCCCACGCGCCGGACTGA

Upstream 100 bases:

>100_bases
CATGGTCGCCACCCTGGCCTTCCTTCTTCTGATGGTCGGGGGTCTTTGCATTTTCGCCCGCTTCCGGGCGCGGATCGTCT
ACTGGCTGTAACGGTGATCG

Downstream 100 bases:

>100_bases
AGGGGGCGTGACCGGGCCCGAGGGCCCGGTCACGCCGGTCCGTCAGGCGACGCGGCGTGCCCCGCCGCGATGACCGCCAC
CCTGGCGCTGCTGGTGGCGT

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MAEIILDHACVEFSIYNARSRSLRNDLMKRVGGHLGGSPKDDRVVVHALRDINLHLQAGTRLALVGHNGAGKSTMLRLLS
GVYEPSAGRAVITGKVSSLLDLSMGMDVEQTGRDNIILRAVFLGMTFTQAKALVPEIAEFSELGPYLDLPMRTYSSGMAM
RLGFGVSTAIQPDILLMDEMISVGDVRFAAKAKARLQKLMEQARIWSSPRTISETLREYCDRAVWLQEGRIVADGPLEDI
LARAHAPD

Sequences:

>Translated_248_residues
MAEIILDHACVEFSIYNARSRSLRNDLMKRVGGHLGGSPKDDRVVVHALRDINLHLQAGTRLALVGHNGAGKSTMLRLLS
GVYEPSAGRAVITGKVSSLLDLSMGMDVEQTGRDNIILRAVFLGMTFTQAKALVPEIAEFSELGPYLDLPMRTYSSGMAM
RLGFGVSTAIQPDILLMDEMISVGDVRFAAKAKARLQKLMEQARIWSSPRTISETLREYCDRAVWLQEGRIVADGPLEDI
LARAHAPD
>Mature_247_residues
AEIILDHACVEFSIYNARSRSLRNDLMKRVGGHLGGSPKDDRVVVHALRDINLHLQAGTRLALVGHNGAGKSTMLRLLSG
VYEPSAGRAVITGKVSSLLDLSMGMDVEQTGRDNIILRAVFLGMTFTQAKALVPEIAEFSELGPYLDLPMRTYSSGMAMR
LGFGVSTAIQPDILLMDEMISVGDVRFAAKAKARLQKLMEQARIWSSPRTISETLREYCDRAVWLQEGRIVADGPLEDIL
ARAHAPD

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbD [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI153792144, Length=145, Percent_Identity=28.9655172413793, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI87081782, Length=152, Percent_Identity=30.2631578947368, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789032, Length=217, Percent_Identity=29.9539170506912, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787758, Length=215, Percent_Identity=28.8372093023256, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787089, Length=208, Percent_Identity=28.3653846153846, Blast_Score=62, Evalue=4e-11,
Organism=Drosophila melanogaster, GI221500365, Length=192, Percent_Identity=27.6041666666667, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI116007184, Length=192, Percent_Identity=27.6041666666667, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 27191; Mature: 27060

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEIILDHACVEFSIYNARSRSLRNDLMKRVGGHLGGSPKDDRVVVHALRDINLHLQAGT
CCCHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEEHHHCEEEEECCC
RLALVGHNGAGKSTMLRLLSGVYEPSAGRAVITGKVSSLLDLSMGMDVEQTGRDNIILRA
EEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHCCCHHHCCCCCHHHHH
VFLGMTFTQAKALVPEIAEFSELGPYLDLPMRTYSSGMAMRLGFGVSTAIQPDILLMDEM
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCHHHHHHH
ISVGDVRFAAKAKARLQKLMEQARIWSSPRTISETLREYCDRAVWLQEGRIVADGPLEDI
HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCHHHH
LARAHAPD
HHHCCCCC
>Mature Secondary Structure 
AEIILDHACVEFSIYNARSRSLRNDLMKRVGGHLGGSPKDDRVVVHALRDINLHLQAGT
CCHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEEHHHCEEEEECCC
RLALVGHNGAGKSTMLRLLSGVYEPSAGRAVITGKVSSLLDLSMGMDVEQTGRDNIILRA
EEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHCCCHHHCCCCCHHHHH
VFLGMTFTQAKALVPEIAEFSELGPYLDLPMRTYSSGMAMRLGFGVSTAIQPDILLMDEM
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCHHHHHHH
ISVGDVRFAAKAKARLQKLMEQARIWSSPRTISETLREYCDRAVWLQEGRIVADGPLEDI
HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCHHHH
LARAHAPD
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]