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The map label for this gene is rfbD [H]

Identifier: 162148993

GI number: 162148993

Start: 3314833

End: 3315633

Strand: Direct

Name: rfbD [H]

Synonym: GDI_3223

Alternate gene names: 162148993

Gene position: 3314833-3315633 (Clockwise)

Preceding gene: 162148992

Following gene: 162148994

Centisome position: 84.04

GC content: 56.05

Gene sequence:

>801_bases
ATGCCCAATAATGTCTATTTACGTCCTGCGCTGACAGATATTGTTCACAGCCTTTCCCAATGGCAGATATCCTGGCTTCT
CGGCATCGGCGACATCAAGCAGCGTTATTCGCGCTCCAAGCTGGGGCAGTTCTGGATCACCATGAGCATGGTGGTCTTTA
TTGTTGCGATCGGCGTCGTCTACAGCTTCCTGTTCCATCAGTCGATCCACGACTTCCTGCCTTACGTGGCCTGCAATTAC
GTCGTCTGGAACCTGATTTCGGGCGGGGTGATGGACAGTTCGACCGCCTTCGTGCAGGCGCAGGATTATATCCGGCAGAC
GAAGATCCCCCGCTCCGTTTTCGCGTTACGGGTATTGGTCAGGAATTGCATATTCTTCCTGCATAATTTCCTGATCATTC
CCGTCGTTTTTATTGTCATGATGCATCCTGTTTCCTGGACTGTCCTGCTGGCGATCCCCGGTGTGATGTTCATCATGGGG
TGCGGATTTTTCACCTGTCTTTCCATCGGCGTGATCTGCACGCGCTTCCGCGATCTGCCCCAGATCGTCCAGAGCCTGAT
GCAGTTGCTGATGTTCGTGACCCCGGTGATGTGGCCGGAAAGCTCGCTCGCGCCGCAGGTGCGGGCCATGATGGCCTACA
ATCCGTTCACGGCGATCATGCACATGGCGACCGAGCCCCTGCTGGGAACCGTGCCGAGCCTGCAGGAGTACATGGTCGCC
ACCCTGGCCTTCCTTCTTCTGATGGTCGGGGGTCTTTGCATTTTCGCCCGCTTCCGGGCGCGGATCGTCTACTGGCTGTA
A

Upstream 100 bases:

>100_bases
TGCAAGCGTACCGTGGGTTCGAATCCCACCCTCTCCGCCATGAAATGGCTCCAGCCGCTTCCTGAGAACATCCGGTTTTC
AATCCGCCCCAGGACAGTCT

Downstream 100 bases:

>100_bases
CGGTGATCGATGGCTGAAATCATACTGGACCACGCGTGTGTCGAATTTTCGATCTACAACGCACGCAGCCGCTCCCTGCG
CAACGACCTGATGAAGCGGG

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MPNNVYLRPALTDIVHSLSQWQISWLLGIGDIKQRYSRSKLGQFWITMSMVVFIVAIGVVYSFLFHQSIHDFLPYVACNY
VVWNLISGGVMDSSTAFVQAQDYIRQTKIPRSVFALRVLVRNCIFFLHNFLIIPVVFIVMMHPVSWTVLLAIPGVMFIMG
CGFFTCLSIGVICTRFRDLPQIVQSLMQLLMFVTPVMWPESSLAPQVRAMMAYNPFTAIMHMATEPLLGTVPSLQEYMVA
TLAFLLLMVGGLCIFARFRARIVYWL

Sequences:

>Translated_266_residues
MPNNVYLRPALTDIVHSLSQWQISWLLGIGDIKQRYSRSKLGQFWITMSMVVFIVAIGVVYSFLFHQSIHDFLPYVACNY
VVWNLISGGVMDSSTAFVQAQDYIRQTKIPRSVFALRVLVRNCIFFLHNFLIIPVVFIVMMHPVSWTVLLAIPGVMFIMG
CGFFTCLSIGVICTRFRDLPQIVQSLMQLLMFVTPVMWPESSLAPQVRAMMAYNPFTAIMHMATEPLLGTVPSLQEYMVA
TLAFLLLMVGGLCIFARFRARIVYWL
>Mature_265_residues
PNNVYLRPALTDIVHSLSQWQISWLLGIGDIKQRYSRSKLGQFWITMSMVVFIVAIGVVYSFLFHQSIHDFLPYVACNYV
VWNLISGGVMDSSTAFVQAQDYIRQTKIPRSVFALRVLVRNCIFFLHNFLIIPVVFIVMMHPVSWTVLLAIPGVMFIMGC
GFFTCLSIGVICTRFRDLPQIVQSLMQLLMFVTPVMWPESSLAPQVRAMMAYNPFTAIMHMATEPLLGTVPSLQEYMVAT
LAFLLLMVGGLCIFARFRARIVYWL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbE [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30354; Mature: 30223

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
8.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
8.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PNNVYLRPALTDIVHSLSQWQISWLLGIGDIKQRYSRSKLGQFWITMSMVVFIVAIGVV
CCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YSFLFHQSIHDFLPYVACNYVVWNLISGGVMDSSTAFVQAQDYIRQTKIPRSVFALRVLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH
RNCIFFLHNFLIIPVVFIVMMHPVSWTVLLAIPGVMFIMGCGFFTCLSIGVICTRFRDLP
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIVQSLMQLLMFVTPVMWPESSLAPQVRAMMAYNPFTAIMHMATEPLLGTVPSLQEYMVA
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
TLAFLLLMVGGLCIFARFRARIVYWL
HHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]