BacMap

Definition	Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genome.
Accession	NC_010125
Length	3,944,163

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The map label for this gene is yvfR [H]

Identifier: 162148893

GI number: 162148893

Start: 3213118

End: 3214017

Strand: Direct

Name: yvfR [H]

Synonym: GDI_3123

Alternate gene names: 162148893

Gene position: 3213118-3214017 (Clockwise)

Preceding gene: 162148892

Following gene: 162148898

Centisome position: 81.47

GC content: 68.11

Gene sequence:

>900_bases
ATGACGCACGCAACATCTGCCGCGACCGCGCCATCGGTCGTCGAAATGGCCGATCTGGTCAAGACATTCGGCAATCGTCG
TGCGCTGGACGGCATTTCGGCTTCCGTCGCCCCCGGCGAGATCGTGGCGCTGCTGGGGCCGAACGGGGCGGGGAAATCCA
CCCTGATCGGCTGCCTGCTCGGCTTTCTCCTGCCCAGTTCGGGCAGCGTCCGGATCTTCGGGCACGAGGCCGGCGAGTTG
CCGCCGGACATTCGCGCCCGCACGGGGTACGTGCCCCAGAGCATGAACGCCTTTTCCTCGTTCCGCGTGGGGCAGTTGAT
CGACTATCTGGGCACGTTCTACGCCGTGCCGCCCCCGCCGCCCGACCCGGCGCTGCTGGCCTGGGCGAACCTGGATATGA
CAGCCCGGGTCAAGGGGCTGTCGGGCGGGCAGAAGCAGCGGCTGTCCATCGTGCTGGCCTTTCGCCATCGGCCGGATTTC
CTGGTGCTGGACGAACCGGTGGCCAGCCTGGACCCGCAGGCCCGGCGCGATTTCATGACGCTGCTGGCCGATTACTGTGC
CGCGTCGCAACGCAGCGTGCTGATTTCGTCGCACATCCTGTCGGACCTGGAAAAGGTCGCCACCCGCGCCCTGTTCGTCG
CGCGGGGCAGGATCGTCCATGACACGCCGATGGCCCGCTTCCGCGATTCGATCCGCTGGATCGTGCCGGCCGAGGGCGCC
CCGGCCCTGCCGGCGGACCTGCTGCGGGGTTGTCCGGCCCTGAAAATGCTTGGAGGAAACGAGGCGACGGGTGCCGTCCT
GGTGGATGGCTGGTGCGACAGCATGCGCGGGCATGTGGCGGAGGTGGCGGAGATCCGCACGCCCGACCTCGAGGCCGCGT
TCCTGGAAATCACCCGATGA

Upstream 100 bases:

>100_bases
GCACATGCCCGCGCGTGCGATCGCGCGTAACGTTCACGCTCTGGTTGAGTTCCGCGCAATGTGCCCATAATGTGACATAA
CATTGCAGGCAAGGAGCCCG

Downstream 100 bases:

>100_bases
CCCGTGCCTGGACGTGCTACGCGCGGCCCTGCGCAACTATGCCTCGCGCGCGTTCGTCGTCGGGAATCCAACCCTTTATT
CCGCCCTCCTGTTCCTGGCG

Product: thiamine ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MTHATSAATAPSVVEMADLVKTFGNRRALDGISASVAPGEIVALLGPNGAGKSTLIGCLLGFLLPSSGSVRIFGHEAGEL
PPDIRARTGYVPQSMNAFSSFRVGQLIDYLGTFYAVPPPPPDPALLAWANLDMTARVKGLSGGQKQRLSIVLAFRHRPDF
LVLDEPVASLDPQARRDFMTLLADYCAASQRSVLISSHILSDLEKVATRALFVARGRIVHDTPMARFRDSIRWIVPAEGA
PALPADLLRGCPALKMLGGNEATGAVLVDGWCDSMRGHVAEVAEIRTPDLEAAFLEITR

Sequences:

>Translated_299_residues
MTHATSAATAPSVVEMADLVKTFGNRRALDGISASVAPGEIVALLGPNGAGKSTLIGCLLGFLLPSSGSVRIFGHEAGEL
PPDIRARTGYVPQSMNAFSSFRVGQLIDYLGTFYAVPPPPPDPALLAWANLDMTARVKGLSGGQKQRLSIVLAFRHRPDF
LVLDEPVASLDPQARRDFMTLLADYCAASQRSVLISSHILSDLEKVATRALFVARGRIVHDTPMARFRDSIRWIVPAEGA
PALPADLLRGCPALKMLGGNEATGAVLVDGWCDSMRGHVAEVAEIRTPDLEAAFLEITR
>Mature_298_residues
THATSAATAPSVVEMADLVKTFGNRRALDGISASVAPGEIVALLGPNGAGKSTLIGCLLGFLLPSSGSVRIFGHEAGELP
PDIRARTGYVPQSMNAFSSFRVGQLIDYLGTFYAVPPPPPDPALLAWANLDMTARVKGLSGGQKQRLSIVLAFRHRPDFL
VLDEPVASLDPQARRDFMTLLADYCAASQRSVLISSHILSDLEKVATRALFVARGRIVHDTPMARFRDSIRWIVPAEGAP
ALPADLLRGCPALKMLGGNEATGAVLVDGWCDSMRGHVAEVAEIRTPDLEAAFLEITR

Specific function: Unknown

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27477115, Length=218, Percent_Identity=30.2752293577982, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI153792144, Length=202, Percent_Identity=31.6831683168317, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI150417984, Length=196, Percent_Identity=33.6734693877551, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI45446740, Length=215, Percent_Identity=28.8372093023256, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI47078218, Length=215, Percent_Identity=28.8372093023256, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI21536376, Length=214, Percent_Identity=28.9719626168224, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI27262624, Length=204, Percent_Identity=33.8235294117647, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI27262626, Length=204, Percent_Identity=33.8235294117647, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI105990541, Length=220, Percent_Identity=30, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI116734710, Length=214, Percent_Identity=28.5046728971963, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI27881501, Length=214, Percent_Identity=28.0373831775701, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI30795238, Length=214, Percent_Identity=28.0373831775701, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI31657092, Length=221, Percent_Identity=27.6018099547511, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI6005701, Length=202, Percent_Identity=29.7029702970297, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI27436953, Length=202, Percent_Identity=29.7029702970297, Blast_Score=80, Evalue=2e-15,
Organism=Escherichia coli, GI1786319, Length=220, Percent_Identity=33.6363636363636, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1786253, Length=192, Percent_Identity=38.0208333333333, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI87081782, Length=225, Percent_Identity=28.8888888888889, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI48994943, Length=225, Percent_Identity=31.5555555555556, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1788225, Length=227, Percent_Identity=31.7180616740088, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1790544, Length=239, Percent_Identity=31.7991631799163, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787029, Length=218, Percent_Identity=29.8165137614679, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1788761, Length=229, Percent_Identity=29.2576419213974, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87081791, Length=221, Percent_Identity=29.8642533936652, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788165, Length=194, Percent_Identity=31.4432989690722, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789672, Length=223, Percent_Identity=29.1479820627803, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1788450, Length=216, Percent_Identity=26.3888888888889, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081709, Length=217, Percent_Identity=27.6497695852535, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787712, Length=218, Percent_Identity=28.8990825688073, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787089, Length=214, Percent_Identity=29.9065420560748, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786698, Length=183, Percent_Identity=28.4153005464481, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786872, Length=226, Percent_Identity=26.9911504424779, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790739, Length=222, Percent_Identity=26.1261261261261, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1789751, Length=231, Percent_Identity=29.004329004329, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789991, Length=219, Percent_Identity=27.8538812785388, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790525, Length=220, Percent_Identity=25.9090909090909, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787182, Length=227, Percent_Identity=26.431718061674, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787164, Length=221, Percent_Identity=28.9592760180996, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786975, Length=228, Percent_Identity=29.3859649122807, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789586, Length=223, Percent_Identity=28.2511210762332, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788506, Length=213, Percent_Identity=29.5774647887324, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786703, Length=232, Percent_Identity=29.3103448275862, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787370, Length=221, Percent_Identity=27.1493212669683, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788644, Length=225, Percent_Identity=27.1111111111111, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786803, Length=214, Percent_Identity=24.7663551401869, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787143, Length=221, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787792, Length=212, Percent_Identity=27.8301886792453, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786653, Length=225, Percent_Identity=28, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787972, Length=232, Percent_Identity=28.448275862069, Blast_Score=65, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17510237, Length=215, Percent_Identity=29.7674418604651, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17565586, Length=198, Percent_Identity=30.3030303030303, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI71983523, Length=221, Percent_Identity=28.9592760180996, Blast_Score=97, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI71983516, Length=221, Percent_Identity=28.9592760180996, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI71983510, Length=221, Percent_Identity=28.9592760180996, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI115533608, Length=206, Percent_Identity=31.0679611650485, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI193202349, Length=217, Percent_Identity=32.258064516129, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193209708, Length=205, Percent_Identity=31.7073170731707, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=171, Percent_Identity=30.4093567251462, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71984940, Length=191, Percent_Identity=31.413612565445, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17567269, Length=204, Percent_Identity=30.3921568627451, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24650855, Length=212, Percent_Identity=28.3018867924528, Blast_Score=104, Evalue=7e-23,
Organism=Drosophila melanogaster, GI24650853, Length=212, Percent_Identity=28.3018867924528, Blast_Score=104, Evalue=8e-23,
Organism=Drosophila melanogaster, GI281362751, Length=221, Percent_Identity=27.6018099547511, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI85725262, Length=212, Percent_Identity=29.2452830188679, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24582014, Length=219, Percent_Identity=29.2237442922374, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24582012, Length=219, Percent_Identity=29.2237442922374, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24666092, Length=210, Percent_Identity=31.4285714285714, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI28574150, Length=213, Percent_Identity=29.5774647887324, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI116007328, Length=213, Percent_Identity=29.5774647887324, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24643674, Length=210, Percent_Identity=29.0476190476191, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI221512771, Length=212, Percent_Identity=25.9433962264151, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI281363262, Length=214, Percent_Identity=30.8411214953271, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24653245, Length=214, Percent_Identity=30.8411214953271, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24581407, Length=212, Percent_Identity=28.7735849056604, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI45552199, Length=187, Percent_Identity=30.4812834224599, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24648314, Length=214, Percent_Identity=28.0373831775701, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24659289, Length=205, Percent_Identity=31.219512195122, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI28574533, Length=188, Percent_Identity=27.6595744680851, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 31907; Mature: 31776

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHATSAATAPSVVEMADLVKTFGNRRALDGISASVAPGEIVALLGPNGAGKSTLIGCLL
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
GFLLPSSGSVRIFGHEAGELPPDIRARTGYVPQSMNAFSSFRVGQLIDYLGTFYAVPPPP
HHHCCCCCCEEEEECCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCC
PDPALLAWANLDMTARVKGLSGGQKQRLSIVLAFRHRPDFLVLDEPVASLDPQARRDFMT
CCCCEEEEECCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEECCCHHHCCHHHHHHHHH
LLADYCAASQRSVLISSHILSDLEKVATRALFVARGRIVHDTPMARFRDSIRWIVPAEGA
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHCCCEEEEECCCC
PALPADLLRGCPALKMLGGNEATGAVLVDGWCDSMRGHVAEVAEIRTPDLEAAFLEITR
CCCCHHHHCCCCEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEECC
>Mature Secondary Structure 
THATSAATAPSVVEMADLVKTFGNRRALDGISASVAPGEIVALLGPNGAGKSTLIGCLL
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
GFLLPSSGSVRIFGHEAGELPPDIRARTGYVPQSMNAFSSFRVGQLIDYLGTFYAVPPPP
HHHCCCCCCEEEEECCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCC
PDPALLAWANLDMTARVKGLSGGQKQRLSIVLAFRHRPDFLVLDEPVASLDPQARRDFMT
CCCCEEEEECCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEECCCHHHCCHHHHHHHHH
LLADYCAASQRSVLISSHILSDLEKVATRALFVARGRIVHDTPMARFRDSIRWIVPAEGA
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHCCCEEEEECCCC
PALPADLLRGCPALKMLGGNEATGAVLVDGWCDSMRGHVAEVAEIRTPDLEAAFLEITR
CCCCHHHHCCCCEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]