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The map label for this gene is 162148796

Identifier: 162148796

GI number: 162148796

Start: 3115758

End: 3117410

Strand: Reverse

Name: 162148796

Synonym: GDI_3025

Alternate gene names: NA

Gene position: 3117410-3115758 (Counterclockwise)

Preceding gene: 162148798

Following gene: 162148795

Centisome position: 79.04

GC content: 68.36

Gene sequence:

>1653_bases
TTGGTTATGAACGATTTGAGTGATGGTCTGGCCTTTCTGCCCTTGGGCGGAACGGGCGAGATCGGCATGAATCTCAACCT
TTACAGGCTGGGCGGCACATGGCTGGCGGTGGATTGCGGAATCGGCTTCAGCGGCAACGACACGCCGGAAGCCGAGATCC
TGATGCCCGATCCCGTCTTCATCGTCGACCGCAAGGCGGATCTCGCCGGACTGGTCATCACCCACGCGCATGAAGACCAT
CTGGGCGCTGTCGCCCATCTGTGGCCGCGCCTGGGTTGCCCGGTCTATGCCACGCCGTTCGCGGCCGCCGTGCTGCGCCG
CAAGCTGAGCGAGGCCCATCTGCAGCAGCAGGTGAAGATCCACATCATTCCCCCGGGCGGCGAATTCATGGTCGGCCCGT
TCGACCTGCGCTTCATCCCCGTCACCCATTCGGTGCCCGAGGCCCAGGCGCTGGTCCTGCGCACGCCGCAGGGCATCGTG
GTGCATACCGGCGACTGGAAGTTCGATCCCACCCCGATGGTCGGGCCGCCGACCGACATCGCGGCGTTCGAGGCGCTGGG
CGACGAGGGCGTGCTGGCCCTGGTCTGCGACAGCACCAACGTGATGACCCAGGGCCCTTCGGCGTCCGAGGCCGACGTGC
GGCGCGGCATGACCGACCTGATCGGTTCGCTGCAGGGGCGGATTGCCGTGACCTGCTTCGCCAGCAACGTGGCGCGGGTG
GAAACCATCGCCAAGGCGGCGCAGGCCGCCGGGCGTTCGGTGGTGATCGTCGGCCGGTCGCTGCGCAACCTGGACGTGGC
GGCGCGGGAATGCGGCTACCTGGTCGATGTGCCGCCCTTCCTGTCGGAACAGGAAGCCAATTCGCTGCCGGATGACGAGG
TAGTGCTGATCATCACCGGCAGCCAGGGCGAGCCGCGCTCGGCCCTGTCGCGCATCGCCAGCGACAGCCATCCCAACATC
TCGCTGGGCCAGGGCGATACCGTCATCTACAGCAGCCGCATGATCCCGGGGAACGAACAGGCGGTCATGCAGGTGCAGGA
CAACCTGACCCGCCGCGGCGTACGCGTGCTGACCGACCGCGATCATCTGGTGCATGTGTCCGGCCACGCCACCGGCGGCG
ACGTGCGGCGCCTGTTCGACATGGTGCGGCCGCGCTTCGCGGTGCCGGTCCATGGCGAATGGCGCCACCTGACCGCCAAT
GCCGCCATCGCGCGGGAAAAGGGTGTGTCCCCCATCCTGCTGGAAGACGGCGACATCCTGAACCTGGCCCCCGGCGCGGT
CGAGGTCGTGGACACCGCGCCGACCGGCCGCCTGGTGCTGGACGGCGGCCGCCTGCTGCCGATCAATGGCGGGGTGCTGG
CCGCCCGTCGGCGCATGCTGTTCAACGGCATGGTCATCGGCAGCTTCGCGGTGGATGATGAGGGCTACCTGATCGGCGAC
CCCAAGGTCAGCGCGCCGGGCCTGCTGGACCCCGAGGACCCGGAAACCTCGCGCATGACCGAGGAATTCGGTGACGCCCT
GGACGAAATCCCCGACGAACTGCGCCGCGACGACACCACCTTCCGCGAGGCCGCGAAGACCGCGCTCCGCCGCGCCCTGG
GCCGCAAGCTGCAGAAGCGGCCGCTGGTCGACGTCCACCTCCTCCGCGTCTGA

Upstream 100 bases:

>100_bases
GGACCGGCAGGTCCAGACGACGCATGAGACTGATTTTAACGAGCGTATTCATAAGATGAGGCCATCAACCCCATCACGAT
CTGCTCTGGTATAAAAGGAC

Downstream 100 bases:

>100_bases
GTCGGTCCGTAAACGCGCTCTGGTGGCGATCCGACGCGCGTTTCCTGCGCTTCGCTGCTCACGGCCCACAAGGCCGCTCC
GCTGCGATGCTCGGAAACAT

Product: RNA-metabolising metallo-beta-lactamase protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 550; Mature: 550

Protein sequence:

>550_residues
MVMNDLSDGLAFLPLGGTGEIGMNLNLYRLGGTWLAVDCGIGFSGNDTPEAEILMPDPVFIVDRKADLAGLVITHAHEDH
LGAVAHLWPRLGCPVYATPFAAAVLRRKLSEAHLQQQVKIHIIPPGGEFMVGPFDLRFIPVTHSVPEAQALVLRTPQGIV
VHTGDWKFDPTPMVGPPTDIAAFEALGDEGVLALVCDSTNVMTQGPSASEADVRRGMTDLIGSLQGRIAVTCFASNVARV
ETIAKAAQAAGRSVVIVGRSLRNLDVAARECGYLVDVPPFLSEQEANSLPDDEVVLIITGSQGEPRSALSRIASDSHPNI
SLGQGDTVIYSSRMIPGNEQAVMQVQDNLTRRGVRVLTDRDHLVHVSGHATGGDVRRLFDMVRPRFAVPVHGEWRHLTAN
AAIAREKGVSPILLEDGDILNLAPGAVEVVDTAPTGRLVLDGGRLLPINGGVLAARRRMLFNGMVIGSFAVDDEGYLIGD
PKVSAPGLLDPEDPETSRMTEEFGDALDEIPDELRRDDTTFREAAKTALRRALGRKLQKRPLVDVHLLRV

Sequences:

>Translated_550_residues
MVMNDLSDGLAFLPLGGTGEIGMNLNLYRLGGTWLAVDCGIGFSGNDTPEAEILMPDPVFIVDRKADLAGLVITHAHEDH
LGAVAHLWPRLGCPVYATPFAAAVLRRKLSEAHLQQQVKIHIIPPGGEFMVGPFDLRFIPVTHSVPEAQALVLRTPQGIV
VHTGDWKFDPTPMVGPPTDIAAFEALGDEGVLALVCDSTNVMTQGPSASEADVRRGMTDLIGSLQGRIAVTCFASNVARV
ETIAKAAQAAGRSVVIVGRSLRNLDVAARECGYLVDVPPFLSEQEANSLPDDEVVLIITGSQGEPRSALSRIASDSHPNI
SLGQGDTVIYSSRMIPGNEQAVMQVQDNLTRRGVRVLTDRDHLVHVSGHATGGDVRRLFDMVRPRFAVPVHGEWRHLTAN
AAIAREKGVSPILLEDGDILNLAPGAVEVVDTAPTGRLVLDGGRLLPINGGVLAARRRMLFNGMVIGSFAVDDEGYLIGD
PKVSAPGLLDPEDPETSRMTEEFGDALDEIPDELRRDDTTFREAAKTALRRALGRKLQKRPLVDVHLLRV
>Mature_550_residues
MVMNDLSDGLAFLPLGGTGEIGMNLNLYRLGGTWLAVDCGIGFSGNDTPEAEILMPDPVFIVDRKADLAGLVITHAHEDH
LGAVAHLWPRLGCPVYATPFAAAVLRRKLSEAHLQQQVKIHIIPPGGEFMVGPFDLRFIPVTHSVPEAQALVLRTPQGIV
VHTGDWKFDPTPMVGPPTDIAAFEALGDEGVLALVCDSTNVMTQGPSASEADVRRGMTDLIGSLQGRIAVTCFASNVARV
ETIAKAAQAAGRSVVIVGRSLRNLDVAARECGYLVDVPPFLSEQEANSLPDDEVVLIITGSQGEPRSALSRIASDSHPNI
SLGQGDTVIYSSRMIPGNEQAVMQVQDNLTRRGVRVLTDRDHLVHVSGHATGGDVRRLFDMVRPRFAVPVHGEWRHLTAN
AAIAREKGVSPILLEDGDILNLAPGAVEVVDTAPTGRLVLDGGRLLPINGGVLAARRRMLFNGMVIGSFAVDDEGYLIGD
PKVSAPGLLDPEDPETSRMTEEFGDALDEIPDELRRDDTTFREAAKTALRRALGRKLQKRPLVDVHLLRV

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 59124; Mature: 59124

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS00213 LIPOCALIN ; PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMNDLSDGLAFLPLGGTGEIGMNLNLYRLGGTWLAVDCGIGFSGNDTPEAEILMPDPVF
CCCCCCCCCEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCEEECCCCEE
IVDRKADLAGLVITHAHEDHLGAVAHLWPRLGCPVYATPFAAAVLRRKLSEAHLQQQVKI
EEECCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHCCCEEE
HIIPPGGEFMVGPFDLRFIPVTHSVPEAQALVLRTPQGIVVHTGDWKFDPTPMVGPPTDI
EEECCCCCEEECCEEEEEEEEECCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCH
AAFEALGDEGVLALVCDSTNVMTQGPSASEADVRRGMTDLIGSLQGRIAVTCFASNVARV
HHHHHCCCCCEEEEEECCCCEEECCCCCCHHHHHCCHHHHHHHCCCCEEEEEECCCHHHH
ETIAKAAQAAGRSVVIVGRSLRNLDVAARECGYLVDVPPFLSEQEANSLPDDEVVLIITG
HHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCEEECCCCCCCHHHCCCCCCCEEEEEEC
SQGEPRSALSRIASDSHPNISLGQGDTVIYSSRMIPGNEQAVMQVQDNLTRRGVRVLTDR
CCCCHHHHHHHHHCCCCCCEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECC
DHLVHVSGHATGGDVRRLFDMVRPRFAVPVHGEWRHLTANAAIAREKGVSPILLEDGDIL
CCEEEEECCCCCHHHHHHHHHHCCCEEECCCCCCEEEECCHHHHHHCCCCEEEECCCCEE
NLAPGAVEVVDTAPTGRLVLDGGRLLPINGGVLAARRRMLFNGMVIGSFAVDDEGYLIGD
EECCCCEEEEECCCCCEEEEECCEEEEECCCHHHHHHHHHHCCEEEEEEEECCCCEEEEC
PKVSAPGLLDPEDPETSRMTEEFGDALDEIPDELRRDDTTFREAAKTALRRALGRKLQKR
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
PLVDVHLLRV
CCCEEEEEEC
>Mature Secondary Structure
MVMNDLSDGLAFLPLGGTGEIGMNLNLYRLGGTWLAVDCGIGFSGNDTPEAEILMPDPVF
CCCCCCCCCEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCEEECCCCEE
IVDRKADLAGLVITHAHEDHLGAVAHLWPRLGCPVYATPFAAAVLRRKLSEAHLQQQVKI
EEECCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHCCCEEE
HIIPPGGEFMVGPFDLRFIPVTHSVPEAQALVLRTPQGIVVHTGDWKFDPTPMVGPPTDI
EEECCCCCEEECCEEEEEEEEECCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCH
AAFEALGDEGVLALVCDSTNVMTQGPSASEADVRRGMTDLIGSLQGRIAVTCFASNVARV
HHHHHCCCCCEEEEEECCCCEEECCCCCCHHHHHCCHHHHHHHCCCCEEEEEECCCHHHH
ETIAKAAQAAGRSVVIVGRSLRNLDVAARECGYLVDVPPFLSEQEANSLPDDEVVLIITG
HHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCEEECCCCCCCHHHCCCCCCCEEEEEEC
SQGEPRSALSRIASDSHPNISLGQGDTVIYSSRMIPGNEQAVMQVQDNLTRRGVRVLTDR
CCCCHHHHHHHHHCCCCCCEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECC
DHLVHVSGHATGGDVRRLFDMVRPRFAVPVHGEWRHLTANAAIAREKGVSPILLEDGDIL
CCEEEEECCCCCHHHHHHHHHHCCCEEECCCCCCEEEECCHHHHHHCCCCEEEECCCCEE
NLAPGAVEVVDTAPTGRLVLDGGRLLPINGGVLAARRRMLFNGMVIGSFAVDDEGYLIGD
EECCCCEEEEECCCCCEEEEECCEEEEECCCHHHHHHHHHHCCEEEEEEEECCCCEEEEC
PKVSAPGLLDPEDPETSRMTEEFGDALDEIPDELRRDDTTFREAAKTALRRALGRKLQKR
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
PLVDVHLLRV
CCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12948626 [H]