Click here to switch to the map view.

The map label for this gene is yfnA [H]

Identifier: 162148784

GI number: 162148784

Start: 3099799

End: 3101346

Strand: Direct

Name: yfnA [H]

Synonym: GDI_3013

Alternate gene names: 162148784

Gene position: 3099799-3101346 (Clockwise)

Preceding gene: 162148773

Following gene: 162148785

Centisome position: 78.59

GC content: 66.67

Gene sequence:

>1548_bases
ATGCCCGTTGGCCGCCGTTCCGCGTTTCATCGACCCGCTTTTCACCACCCCCGCTTCGGGGGCCCGCTTTTTCAGGAGAC
GCATTGCATGGCGCAGCCGCCCGCTAACCCGCCGACTTCCAGCCTGCTTCGCCGCAAACGAATCGAAATCCCCGCCGACG
CGCAGGGGCTGCGGCGGGTCCTGGGGCCGGGCAGCCTGATCGCGCTGGGAATCGGTTGTACGATCGGCGCCGGGCTGTTT
TCGCTGACCGGCATCGCCGCGTCGGAAAACGCCGGCCCCGCCGTCGTGCTGTCCTATATCGTCGCGGCCATCGCCTGCGG
CTTCGCGGGCCTGTGCTACAGCGAGCTGGCCAGCATGATCCCCATCGCCGGCAGCGCCTATACCTATGCCTACATGGCGC
TGGGCGAGGTCGTGGCCTGGATCATCGGGTGGGACTTGGTGCTGGAATACGCCGTCGGCGCCGCCGCGGTGTCGGTCAGT
TGGTCGCGCTATGTCACGTCGCTGCTGGGGGGATGGGGAATTTCCCTGTCGCCCCGGCTGGTGGCCTCGCCGTTCGAAGC
GGTGGTACTGCCCGACGGCAGCCATGTCGCGGGAATCATGAACCTGCCCGCCGCCTTCATCATCTGCGTCGTGTCGCTGC
TGCTGATTCGCGGGGTGTCGGAATCGGCACGGGTCAACAGCGCCATCGTGGTGGTGAAGCTGGCGATCATCGTCGCGGTG
ATCGCGTTCGGCCTGCCCTATATCAAGACCGCGAACTACGTGCCCTTCATCCCCGCCAATACCGGCACGTTCGGCCATTT
CGGCCTGTCGGGCATCATGCGCGCGGCGGGCACCATCTTCTTCGCCTATGTGGGCTTCGACGCCGTATCCACCGCGGCGC
AGGAGGCCCGCAATCCCGCCCGGGACATGCCCATCGGCATCCTGGGCAGCCTGCTGATCTGCACCGTGGCCTATGTGGCG
TTCTCGCTCGTGCTGACGGGGCTGGTGAATTACAAGGACATGCTGGGCGATGCGGCGCCGGTGGCCACGGCCATCGACCA
GACGCCGTTCGGCTGGCTGAAGCTGGCCGTGAAGTTCGGCATCATCTGCGGCTTCACCTCGGTGCTGCTGGTCCTGCTGC
TGGGCCAGAGCCGCGTCTTCTACGCCATGGCGCGTGACGGGCTGCTGCCGGGGCTGTTTTCGTCCATCCATCCGCGGTGG
CGCACGCCGTGGTATTCCAACCTGCTGTTCATGGTCATCACCGGCGGGCTGGCCGCCTTCCTGCCGATCGACCAGCTTGC
GCACATGACGTCGATCGGCACCCTGCTGGCCTTCGTCATCGTCTGTATCGGGGTGATGTTCCTGCGCCGCAGCGCGCCGG
ACATGGAACGCCGCTTTCGCGTGCCCGGCGGCCCGGTGATTCCGGTGCTGGGCATCGTCTGCTGCCTGGCGGTCATGCTT
TCGCTGGACCGGCTGACCTGGGTCCGGCTGGTGGTCTGGCTGATCGTCGGCATGGCGATCTATTTCGGTTACAGCCGGCG
CAGCAGCCATCTGGCCCGGGGCGCATAG

Upstream 100 bases:

>100_bases
CGCCGCAGCCAGTCACCGGAAGAGTTCCAATGGCCCTTGCACATGCGTCAATGTGATTTCGCGCATTCTAGCGTCTCCAC
GTCGGCGAGGCCACACAACG

Downstream 100 bases:

>100_bases
GCGCCCCGCTGCCCGAAGCTGGCGGGACAGGTGGACGCGGTCCATACTGCCCCACCTGGCCCCGCCCATCTGGGCCCCCG
CCAATTTCGGAGTTCGCTTT

Product: amino acid permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 515; Mature: 514

Protein sequence:

>515_residues
MPVGRRSAFHRPAFHHPRFGGPLFQETHCMAQPPANPPTSSLLRRKRIEIPADAQGLRRVLGPGSLIALGIGCTIGAGLF
SLTGIAASENAGPAVVLSYIVAAIACGFAGLCYSELASMIPIAGSAYTYAYMALGEVVAWIIGWDLVLEYAVGAAAVSVS
WSRYVTSLLGGWGISLSPRLVASPFEAVVLPDGSHVAGIMNLPAAFIICVVSLLLIRGVSESARVNSAIVVVKLAIIVAV
IAFGLPYIKTANYVPFIPANTGTFGHFGLSGIMRAAGTIFFAYVGFDAVSTAAQEARNPARDMPIGILGSLLICTVAYVA
FSLVLTGLVNYKDMLGDAAPVATAIDQTPFGWLKLAVKFGIICGFTSVLLVLLLGQSRVFYAMARDGLLPGLFSSIHPRW
RTPWYSNLLFMVITGGLAAFLPIDQLAHMTSIGTLLAFVIVCIGVMFLRRSAPDMERRFRVPGGPVIPVLGIVCCLAVML
SLDRLTWVRLVVWLIVGMAIYFGYSRRSSHLARGA

Sequences:

>Translated_515_residues
MPVGRRSAFHRPAFHHPRFGGPLFQETHCMAQPPANPPTSSLLRRKRIEIPADAQGLRRVLGPGSLIALGIGCTIGAGLF
SLTGIAASENAGPAVVLSYIVAAIACGFAGLCYSELASMIPIAGSAYTYAYMALGEVVAWIIGWDLVLEYAVGAAAVSVS
WSRYVTSLLGGWGISLSPRLVASPFEAVVLPDGSHVAGIMNLPAAFIICVVSLLLIRGVSESARVNSAIVVVKLAIIVAV
IAFGLPYIKTANYVPFIPANTGTFGHFGLSGIMRAAGTIFFAYVGFDAVSTAAQEARNPARDMPIGILGSLLICTVAYVA
FSLVLTGLVNYKDMLGDAAPVATAIDQTPFGWLKLAVKFGIICGFTSVLLVLLLGQSRVFYAMARDGLLPGLFSSIHPRW
RTPWYSNLLFMVITGGLAAFLPIDQLAHMTSIGTLLAFVIVCIGVMFLRRSAPDMERRFRVPGGPVIPVLGIVCCLAVML
SLDRLTWVRLVVWLIVGMAIYFGYSRRSSHLARGA
>Mature_514_residues
PVGRRSAFHRPAFHHPRFGGPLFQETHCMAQPPANPPTSSLLRRKRIEIPADAQGLRRVLGPGSLIALGIGCTIGAGLFS
LTGIAASENAGPAVVLSYIVAAIACGFAGLCYSELASMIPIAGSAYTYAYMALGEVVAWIIGWDLVLEYAVGAAAVSVSW
SRYVTSLLGGWGISLSPRLVASPFEAVVLPDGSHVAGIMNLPAAFIICVVSLLLIRGVSESARVNSAIVVVKLAIIVAVI
AFGLPYIKTANYVPFIPANTGTFGHFGLSGIMRAAGTIFFAYVGFDAVSTAAQEARNPARDMPIGILGSLLICTVAYVAF
SLVLTGLVNYKDMLGDAAPVATAIDQTPFGWLKLAVKFGIICGFTSVLLVLLLGQSRVFYAMARDGLLPGLFSSIHPRWR
TPWYSNLLFMVITGGLAAFLPIDQLAHMTSIGTLLAFVIVCIGVMFLRRSAPDMERRFRVPGGPVIPVLGIVCCLAVMLS
LDRLTWVRLVVWLIVGMAIYFGYSRRSSHLARGA

Specific function: Unknown

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Homo sapiens, GI4507047, Length=431, Percent_Identity=34.338747099768, Blast_Score=219, Evalue=4e-57,
Organism=Homo sapiens, GI258614003, Length=432, Percent_Identity=33.5648148148148, Blast_Score=218, Evalue=9e-57,
Organism=Homo sapiens, GI258614005, Length=432, Percent_Identity=33.5648148148148, Blast_Score=218, Evalue=1e-56,
Organism=Homo sapiens, GI258645169, Length=432, Percent_Identity=33.5648148148148, Blast_Score=215, Evalue=8e-56,
Organism=Homo sapiens, GI114326544, Length=436, Percent_Identity=34.1743119266055, Blast_Score=213, Evalue=3e-55,
Organism=Homo sapiens, GI114326550, Length=436, Percent_Identity=34.1743119266055, Blast_Score=213, Evalue=3e-55,
Organism=Homo sapiens, GI110347453, Length=413, Percent_Identity=37.046004842615, Blast_Score=205, Evalue=7e-53,
Organism=Homo sapiens, GI181337167, Length=419, Percent_Identity=34.1288782816229, Blast_Score=198, Evalue=1e-50,
Organism=Homo sapiens, GI115648063, Length=446, Percent_Identity=23.542600896861, Blast_Score=100, Evalue=5e-21,
Organism=Homo sapiens, GI115648022, Length=446, Percent_Identity=23.542600896861, Blast_Score=100, Evalue=5e-21,
Organism=Homo sapiens, GI7657683, Length=392, Percent_Identity=27.2959183673469, Blast_Score=97, Evalue=5e-20,
Organism=Homo sapiens, GI187423910, Length=478, Percent_Identity=23.6401673640167, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI7657591, Length=478, Percent_Identity=23.6401673640167, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI186910308, Length=455, Percent_Identity=24.3956043956044, Blast_Score=93, Evalue=7e-19,
Organism=Homo sapiens, GI186910306, Length=455, Percent_Identity=24.3956043956044, Blast_Score=93, Evalue=7e-19,
Organism=Homo sapiens, GI186910304, Length=455, Percent_Identity=24.3956043956044, Blast_Score=93, Evalue=7e-19,
Organism=Homo sapiens, GI71979932, Length=420, Percent_Identity=26.1904761904762, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI33286428, Length=419, Percent_Identity=24.1050119331742, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI71999149, Length=413, Percent_Identity=24.2130750605327, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI87082250, Length=478, Percent_Identity=24.4769874476987, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI87081869, Length=470, Percent_Identity=23.8297872340426, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87082023, Length=465, Percent_Identity=23.6559139784946, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI87081708, Length=467, Percent_Identity=22.2698072805139, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1786602, Length=439, Percent_Identity=22.7790432801822, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1786302, Length=427, Percent_Identity=22.7166276346604, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI87081915, Length=446, Percent_Identity=22.6457399103139, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17532491, Length=409, Percent_Identity=34.718826405868, Blast_Score=220, Evalue=1e-57,
Organism=Caenorhabditis elegans, GI17533459, Length=416, Percent_Identity=32.6923076923077, Blast_Score=195, Evalue=4e-50,
Organism=Caenorhabditis elegans, GI17531343, Length=430, Percent_Identity=31.1627906976744, Blast_Score=186, Evalue=3e-47,
Organism=Caenorhabditis elegans, GI17568033, Length=461, Percent_Identity=21.6919739696312, Blast_Score=93, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI32566699, Length=366, Percent_Identity=24.0437158469945, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17537453, Length=413, Percent_Identity=25.4237288135593, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71993915, Length=420, Percent_Identity=24.047619047619, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17540018, Length=205, Percent_Identity=27.3170731707317, Blast_Score=75, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI71995382, Length=427, Percent_Identity=23.8875878220141, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71995388, Length=427, Percent_Identity=23.8875878220141, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24667468, Length=427, Percent_Identity=36.0655737704918, Blast_Score=248, Evalue=1e-65,
Organism=Drosophila melanogaster, GI221512776, Length=448, Percent_Identity=34.375, Blast_Score=238, Evalue=5e-63,
Organism=Drosophila melanogaster, GI24666159, Length=430, Percent_Identity=35.1162790697674, Blast_Score=238, Evalue=8e-63,
Organism=Drosophila melanogaster, GI24668806, Length=425, Percent_Identity=34.8235294117647, Blast_Score=232, Evalue=5e-61,
Organism=Drosophila melanogaster, GI21356285, Length=425, Percent_Identity=34.8235294117647, Blast_Score=232, Evalue=5e-61,
Organism=Drosophila melanogaster, GI24668802, Length=425, Percent_Identity=34.8235294117647, Blast_Score=232, Evalue=5e-61,
Organism=Drosophila melanogaster, GI281366235, Length=423, Percent_Identity=34.9881796690307, Blast_Score=190, Evalue=2e-48,
Organism=Drosophila melanogaster, GI116007820, Length=423, Percent_Identity=34.9881796690307, Blast_Score=190, Evalue=2e-48,
Organism=Drosophila melanogaster, GI116007818, Length=423, Percent_Identity=34.9881796690307, Blast_Score=188, Evalue=6e-48,
Organism=Drosophila melanogaster, GI85725152, Length=423, Percent_Identity=34.9881796690307, Blast_Score=188, Evalue=6e-48,
Organism=Drosophila melanogaster, GI161077963, Length=436, Percent_Identity=33.7155963302752, Blast_Score=180, Evalue=3e-45,
Organism=Drosophila melanogaster, GI21357367, Length=462, Percent_Identity=23.8095238095238, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI221331183, Length=461, Percent_Identity=23.2104121475054, Blast_Score=98, Evalue=2e-20,
Organism=Drosophila melanogaster, GI17647653, Length=461, Percent_Identity=23.2104121475054, Blast_Score=98, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24664379, Length=461, Percent_Identity=23.2104121475054, Blast_Score=98, Evalue=2e-20,
Organism=Drosophila melanogaster, GI45550968, Length=436, Percent_Identity=24.3119266055046, Blast_Score=89, Evalue=6e-18,
Organism=Drosophila melanogaster, GI19921172, Length=436, Percent_Identity=24.3119266055046, Blast_Score=89, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24651635, Length=401, Percent_Identity=23.4413965087282, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24651633, Length=401, Percent_Identity=23.4413965087282, Blast_Score=84, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR015606 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 54764; Mature: 54632

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVGRRSAFHRPAFHHPRFGGPLFQETHCMAQPPANPPTSSLLRRKRIEIPADAQGLRRV
CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHH
LGPGSLIALGIGCTIGAGLFSLTGIAASENAGPAVVLSYIVAAIACGFAGLCYSELASMI
HCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PIAGSAYTYAYMALGEVVAWIIGWDLVLEYAVGAAAVSVSWSRYVTSLLGGWGISLSPRL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
VASPFEAVVLPDGSHVAGIMNLPAAFIICVVSLLLIRGVSESARVNSAIVVVKLAIIVAV
HCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
IAFGLPYIKTANYVPFIPANTGTFGHFGLSGIMRAAGTIFFAYVGFDAVSTAAQEARNPA
HHHCCCHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RDMPIGILGSLLICTVAYVAFSLVLTGLVNYKDMLGDAAPVATAIDQTPFGWLKLAVKFG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHH
IICGFTSVLLVLLLGQSRVFYAMARDGLLPGLFSSIHPRWRTPWYSNLLFMVITGGLAAF
HHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
LPIDQLAHMTSIGTLLAFVIVCIGVMFLRRSAPDMERRFRVPGGPVIPVLGIVCCLAVML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHH
SLDRLTWVRLVVWLIVGMAIYFGYSRRSSHLARGA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCC
>Mature Secondary Structure 
PVGRRSAFHRPAFHHPRFGGPLFQETHCMAQPPANPPTSSLLRRKRIEIPADAQGLRRV
CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHH
LGPGSLIALGIGCTIGAGLFSLTGIAASENAGPAVVLSYIVAAIACGFAGLCYSELASMI
HCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PIAGSAYTYAYMALGEVVAWIIGWDLVLEYAVGAAAVSVSWSRYVTSLLGGWGISLSPRL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
VASPFEAVVLPDGSHVAGIMNLPAAFIICVVSLLLIRGVSESARVNSAIVVVKLAIIVAV
HCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
IAFGLPYIKTANYVPFIPANTGTFGHFGLSGIMRAAGTIFFAYVGFDAVSTAAQEARNPA
HHHCCCHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RDMPIGILGSLLICTVAYVAFSLVLTGLVNYKDMLGDAAPVATAIDQTPFGWLKLAVKFG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHH
IICGFTSVLLVLLLGQSRVFYAMARDGLLPGLFSSIHPRWRTPWYSNLLFMVITGGLAAF
HHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
LPIDQLAHMTSIGTLLAFVIVCIGVMFLRRSAPDMERRFRVPGGPVIPVLGIVCCLAVML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHH
SLDRLTWVRLVVWLIVGMAIYFGYSRRSSHLARGA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]