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The map label for this gene is rpoE

Identifier: 162148541

GI number: 162148541

Start: 2854361

End: 2854891

Strand: Direct

Name: rpoE

Synonym: GDI_2765

Alternate gene names: NA

Gene position: 2854361-2854891 (Clockwise)

Preceding gene: 162148540

Following gene: 162148542

Centisome position: 72.37

GC content: 62.15

Gene sequence:

>531_bases
GTGACGGAAGCGGATTGGAGCCGCTGGATGGCGGCGGCTCAGGCGGGCGACGCCGATGCCTATCGCCACGTGCTCGCAGA
GGCCCAGGATTGGCTGAGACGCTTCTTTCTCCGGCGTCTGCCGCTATCCATGGTTGACGATGCAGTACAGGACACGTTGC
TTGCCGTTCACGAGAAACGGCATACATTCAATCCGTCCCAGAAGTTCGGCCCCTGGATCGCGGCGATCGCTCGATACAAG
TGGATCGATCGGTTGCGGGCCGCCAGCCGGGCGAATGATGCGCCGCTCGACGACGATCTGCCGGTGCAGGATCATGAGGA
GCAGGTGACGACGGCCTATGCGCTGGAACGCCTGCTCGGGCAGTTGAAGCCAGCGCAGGCGGAAGCCATCCGCCTCGTCA
AGCTGCGCGGGTTGAGTATCGAGGAGGCGGCACGCCGAACGGGACAGTCCGCCACGCTGGTCAAGGTCAACATTCATCGC
GGTCTGAACCGCATGAATGCTTTAGTAATGCGAGGTAGTGATGTCGACTGA

Upstream 100 bases:

>100_bases
TGCACGCGTTGTTCGCATCGTCCTGGCGCGCGCAGCCTGTGCTGACGCTGGCCGACGATGGCGGGAGCTGACTCTCGCCG
TAACCAGGGACGGAGGGTTC

Downstream 100 bases:

>100_bases
TCCCCTGATCGATCGGCTCGCGACCGGCCTGCGGCCCGTCAGACGGCGGACGCCGTGGCGGGACGCGACGATCCTGTTGG
CGCTCGGCGTGATCGAGATC

Product: RNA polymerase sigma-70 factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma-; RNA Polymerase Sigma-70 Factor; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-E Factor Protein; ECF-Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Q Factor; Extracytoplasmic Function AlteRNAtive Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily Protein; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma Factor Protein; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Factor NccH; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MTEADWSRWMAAAQAGDADAYRHVLAEAQDWLRRFFLRRLPLSMVDDAVQDTLLAVHEKRHTFNPSQKFGPWIAAIARYK
WIDRLRAASRANDAPLDDDLPVQDHEEQVTTAYALERLLGQLKPAQAEAIRLVKLRGLSIEEAARRTGQSATLVKVNIHR
GLNRMNALVMRGSDVD

Sequences:

>Translated_176_residues
MTEADWSRWMAAAQAGDADAYRHVLAEAQDWLRRFFLRRLPLSMVDDAVQDTLLAVHEKRHTFNPSQKFGPWIAAIARYK
WIDRLRAASRANDAPLDDDLPVQDHEEQVTTAYALERLLGQLKPAQAEAIRLVKLRGLSIEEAARRTGQSATLVKVNIHR
GLNRMNALVMRGSDVD
>Mature_175_residues
TEADWSRWMAAAQAGDADAYRHVLAEAQDWLRRFFLRRLPLSMVDDAVQDTLLAVHEKRHTFNPSQKFGPWIAAIARYKW
IDRLRAASRANDAPLDDDLPVQDHEEQVTTAYALERLLGQLKPAQAEAIRLVKLRGLSIEEAARRTGQSATLVKVNIHRG
LNRMNALVMRGSDVD

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19969; Mature: 19838

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEADWSRWMAAAQAGDADAYRHVLAEAQDWLRRFFLRRLPLSMVDDAVQDTLLAVHEKR
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
HTFNPSQKFGPWIAAIARYKWIDRLRAASRANDAPLDDDLPVQDHEEQVTTAYALERLLG
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
QLKPAQAEAIRLVKLRGLSIEEAARRTGQSATLVKVNIHRGLNRMNALVMRGSDVD
HCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TEADWSRWMAAAQAGDADAYRHVLAEAQDWLRRFFLRRLPLSMVDDAVQDTLLAVHEKR
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
HTFNPSQKFGPWIAAIARYKWIDRLRAASRANDAPLDDDLPVQDHEEQVTTAYALERLLG
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
QLKPAQAEAIRLVKLRGLSIEEAARRTGQSATLVKVNIHRGLNRMNALVMRGSDVD
HCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA