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The map label for this gene is rbsC [H]

Identifier: 162148440

GI number: 162148440

Start: 2751940

End: 2752863

Strand: Reverse

Name: rbsC [H]

Synonym: GDI_2659

Alternate gene names: 162148440

Gene position: 2752863-2751940 (Counterclockwise)

Preceding gene: 162148441

Following gene: 162148439

Centisome position: 69.8

GC content: 64.61

Gene sequence:

>924_bases
ATGATCGTGATTTTCGCCCTCACGTCGCGCGCGTTCTTTTCGGTAGATAACGGGCTGACCGTCGCGCTGCAGACCACGCA
GATCGCCTATCTGGGGATCGGCGCCACCTGCGTGATCATTACCGGCGGCATCGACCTGTCCGTGGGGTCGGTGCTTGCCC
TGTCCGGCGTGGTCGCGGCGCTCGCGGTGAAGGCCGGGGTTCCGGTTCCCCTGGGTTTCGCCATCGGAATCCTGACCGGC
GGCGCGTGCGGCGCCATCAACGGGATCATCATCACATGGATGAAGCTGCCGCCGTTCATCGCGACGCTTGGCATGATGAT
GGTCGCGCGCGGCGTGGCGTTGCAGATCACCGGGGCACGGCCGGTTTCCGGGCTGGGGGATGCGTTCGGGGTGCTGGGAA
ACGGCGCCCTGTTCCGGATCGTTCGCGACGGCAGCGACGGGTTTCCGAACGTGGTGTTCGTGGGGATTCCCTATCCCGTC
ATCCTGATGGTCGTGCTCGCCGTGGTCGTGGCCATCATGCTCGGCCGGATGCCGATCGGACGGCATGCCTATGCCGTGGG
GTCCAGCAGCGAGGCCGCGCGGCTTTCCGGCGTCAACGTGGCGCGGGTCAAGATGGTGGCCTATGGCATGTCGGGGCTGC
TGGCCGGGCTGGCCGGATGTGTCCTGATGTCACGCCTGGTGACCGCGCAGCCGAATGAAGGCATCGCGGCCGAAATGGAT
GCGATCGCCAGCGCCGTGATCGGCGGTACGTCCCTGATGGGTGGGGTCGGGACGATTTCCGGTACCATGATCGGCGCGTT
CGTGATCGGCATCCTTCGCAATGGCCTGAACATGAACGGCGTTTCCTACTTCATCCAGCAGATCGTCATCGGACTGGTCA
TCATCGGGACGGTCTGGATCGATCAGATGCGAATGAAGCGGTGA

Upstream 100 bases:

>100_bases
GCAGCATGAAGGGCGTCCGCCCCTTATACCCGCGCGCCGGTTGTCCGACCGACAGAAGGACCTGATCCAGAAATTCGCGG
CCCTGGGCAGCCTGGTCGTG

Downstream 100 bases:

>100_bases
ATGATACGGGCCGTATGCTGCTCCGTGGCTCGGCGACCGATAACAAGAAGAAAACAGGAATCGAACATGAGACGTCTTTT
ATGCGCGGCGACAATGCTGT

Product: ribose ABC transporter permease rbsC

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MIVIFALTSRAFFSVDNGLTVALQTTQIAYLGIGATCVIITGGIDLSVGSVLALSGVVAALAVKAGVPVPLGFAIGILTG
GACGAINGIIITWMKLPPFIATLGMMMVARGVALQITGARPVSGLGDAFGVLGNGALFRIVRDGSDGFPNVVFVGIPYPV
ILMVVLAVVVAIMLGRMPIGRHAYAVGSSSEAARLSGVNVARVKMVAYGMSGLLAGLAGCVLMSRLVTAQPNEGIAAEMD
AIASAVIGGTSLMGGVGTISGTMIGAFVIGILRNGLNMNGVSYFIQQIVIGLVIIGTVWIDQMRMKR

Sequences:

>Translated_307_residues
MIVIFALTSRAFFSVDNGLTVALQTTQIAYLGIGATCVIITGGIDLSVGSVLALSGVVAALAVKAGVPVPLGFAIGILTG
GACGAINGIIITWMKLPPFIATLGMMMVARGVALQITGARPVSGLGDAFGVLGNGALFRIVRDGSDGFPNVVFVGIPYPV
ILMVVLAVVVAIMLGRMPIGRHAYAVGSSSEAARLSGVNVARVKMVAYGMSGLLAGLAGCVLMSRLVTAQPNEGIAAEMD
AIASAVIGGTSLMGGVGTISGTMIGAFVIGILRNGLNMNGVSYFIQQIVIGLVIIGTVWIDQMRMKR
>Mature_307_residues
MIVIFALTSRAFFSVDNGLTVALQTTQIAYLGIGATCVIITGGIDLSVGSVLALSGVVAALAVKAGVPVPLGFAIGILTG
GACGAINGIIITWMKLPPFIATLGMMMVARGVALQITGARPVSGLGDAFGVLGNGALFRIVRDGSDGFPNVVFVGIPYPV
ILMVVLAVVVAIMLGRMPIGRHAYAVGSSSEAARLSGVNVARVKMVAYGMSGLLAGLAGCVLMSRLVTAQPNEGIAAEMD
AIASAVIGGTSLMGGVGTISGTMIGAFVIGILRNGLNMNGVSYFIQQIVIGLVIIGTVWIDQMRMKR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=308, Percent_Identity=41.2337662337662, Blast_Score=187, Evalue=5e-49,
Organism=Escherichia coli, GI1790524, Length=302, Percent_Identity=38.7417218543046, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1789992, Length=353, Percent_Identity=34.5609065155807, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI145693152, Length=266, Percent_Identity=34.2105263157895, Blast_Score=141, Evalue=4e-35,
Organism=Escherichia coli, GI1788896, Length=308, Percent_Identity=31.4935064935065, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI87082395, Length=277, Percent_Identity=34.2960288808664, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1787794, Length=260, Percent_Identity=32.6923076923077, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI145693214, Length=261, Percent_Identity=34.4827586206897, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787793, Length=294, Percent_Identity=30.6122448979592, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788471, Length=292, Percent_Identity=31.1643835616438, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 31196; Mature: 31196

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVIFALTSRAFFSVDNGLTVALQTTQIAYLGIGATCVIITGGIDLSVGSVLALSGVVAA
CEEEEEECCCEEEEECCCEEEEEEEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHH
LAVKAGVPVPLGFAIGILTGGACGAINGIIITWMKLPPFIATLGMMMVARGVALQITGAR
HHHHCCCCCCHHHHHHHHCCCCHHHCCCCEEEEHHCCHHHHHHHHHHHHCCCEEEEECCC
PVSGLGDAFGVLGNGALFRIVRDGSDGFPNVVFVGIPYPVILMVVLAVVVAIMLGRMPIG
CCCCCCHHHHHHCCCEEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCC
RHAYAVGSSSEAARLSGVNVARVKMVAYGMSGLLAGLAGCVLMSRLVTAQPNEGIAAEMD
CCEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
AIASAVIGGTSLMGGVGTISGTMIGAFVIGILRNGLNMNGVSYFIQQIVIGLVIIGTVWI
HHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
DQMRMKR
HHHHHCC
>Mature Secondary Structure
MIVIFALTSRAFFSVDNGLTVALQTTQIAYLGIGATCVIITGGIDLSVGSVLALSGVVAA
CEEEEEECCCEEEEECCCEEEEEEEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHH
LAVKAGVPVPLGFAIGILTGGACGAINGIIITWMKLPPFIATLGMMMVARGVALQITGAR
HHHHCCCCCCHHHHHHHHCCCCHHHCCCCEEEEHHCCHHHHHHHHHHHHCCCEEEEECCC
PVSGLGDAFGVLGNGALFRIVRDGSDGFPNVVFVGIPYPVILMVVLAVVVAIMLGRMPIG
CCCCCCHHHHHHCCCEEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCC
RHAYAVGSSSEAARLSGVNVARVKMVAYGMSGLLAGLAGCVLMSRLVTAQPNEGIAAEMD
CCEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
AIASAVIGGTSLMGGVGTISGTMIGAFVIGILRNGLNMNGVSYFIQQIVIGLVIIGTVWI
HHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
DQMRMKR
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]