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The map label for this gene is rbsB [H]

Identifier: 162148439

GI number: 162148439

Start: 2750929

End: 2751939

Strand: Reverse

Name: rbsB [H]

Synonym: GDI_2658

Alternate gene names: 162148439

Gene position: 2751939-2750929 (Counterclockwise)

Preceding gene: 162148440

Following gene: 162148438

Centisome position: 69.77

GC content: 61.03

Gene sequence:

>1011_bases
ATGATACGGGCCGTATGCTGCTCCGTGGCTCGGCGACCGATAACAAGAAGAAAACAGGAATCGAACATGAGACGTCTTTT
ATGCGCGGCGACAATGCTGTGCGCCGCCGTTGCCGTGGGGCAGGCCCATGCGGCGGATCGCGGGATCGCGGTCATCGTCA
AGACCGCCAATTCCAACTACTGGCAGAACGTCCGAAAGGGCGCCGCCGACGCCGTTGCGAAGGTAGAGAACTATACGATG
ACCTTTCAGGGACCGACGTCCGAATCCGCGGTCGCGGACCAGGTCAACATGGTCGCCGACGCCGTGACGCAGAAGGTCGC
GGCCATCGTGCTGGCCCCGTCCGATCCGGATGCTCTGGTGCCCTCCATCCGCAAGGCGTGGGAGGCGCATATTCCCGTCG
TGCTGATCGACAGCATGATTTCTGATTCGGGTGCCAAATATTACCAGTCCTTCCTCGCGACCGACAACGAGGCGGCGGGC
GAGGCGCTGGGCAAGGAAATGGTCGATCATGTCGGACAGACCGGCAAGGTCGCGATCATGTCGTATGTGCCGGGTGTGGG
GTCTGAAATCGGCCGGGTCGGCGGATTCAGGAAATATATCGCCGAACATTCGCATATCCAGATCGTCGGTCCCTTCTATT
CGCAGTCCCAGATGGCCCTGGCCATGAACCAGACGACCGACGTGCTGGCCTCGAACCCCGATCTGAAGGGTATTTTCGCC
GCCAACGAGATGACGGCGGTGGGCGTGGGCCGTGCGATCCAGCAGGCGGGAAAAAGCGGAAAGCTCTACGCCATCGCCTT
TGATGGAAACGAGGACGAACAGGGGTTCGTCAGGAGCGGCACGTTCCAGTTGCTTGCCGTGCAAGGGTCCTACGCGATGG
GCGCGAAGGGGGTCGAGACGGCGATCGGCGTCCTGACGGGGGCGAAGCCCACCAAATATGTCAACACGGGCGTGGTCTTC
GTGACCAGTGCGAACCTGGATTCGCCGGAAGCCAAGCAGGTTCTGTATTGA

Upstream 100 bases:

>100_bases
CCTGAACATGAACGGCGTTTCCTACTTCATCCAGCAGATCGTCATCGGACTGGTCATCATCGGGACGGTCTGGATCGATC
AGATGCGAATGAAGCGGTGA

Downstream 100 bases:

>100_bases
TCGGGAGGATGTCATGAACAGATCTTTTCCGAAAATCGGCATCCGCCCGATCATCGACGGGCGGCGCGGCGGCATTCGCG
AATCGCTTGAAGACGTCACG

Product: D-ribose-binding periplasmic protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MIRAVCCSVARRPITRRKQESNMRRLLCAATMLCAAVAVGQAHAADRGIAVIVKTANSNYWQNVRKGAADAVAKVENYTM
TFQGPTSESAVADQVNMVADAVTQKVAAIVLAPSDPDALVPSIRKAWEAHIPVVLIDSMISDSGAKYYQSFLATDNEAAG
EALGKEMVDHVGQTGKVAIMSYVPGVGSEIGRVGGFRKYIAEHSHIQIVGPFYSQSQMALAMNQTTDVLASNPDLKGIFA
ANEMTAVGVGRAIQQAGKSGKLYAIAFDGNEDEQGFVRSGTFQLLAVQGSYAMGAKGVETAIGVLTGAKPTKYVNTGVVF
VTSANLDSPEAKQVLY

Sequences:

>Translated_336_residues
MIRAVCCSVARRPITRRKQESNMRRLLCAATMLCAAVAVGQAHAADRGIAVIVKTANSNYWQNVRKGAADAVAKVENYTM
TFQGPTSESAVADQVNMVADAVTQKVAAIVLAPSDPDALVPSIRKAWEAHIPVVLIDSMISDSGAKYYQSFLATDNEAAG
EALGKEMVDHVGQTGKVAIMSYVPGVGSEIGRVGGFRKYIAEHSHIQIVGPFYSQSQMALAMNQTTDVLASNPDLKGIFA
ANEMTAVGVGRAIQQAGKSGKLYAIAFDGNEDEQGFVRSGTFQLLAVQGSYAMGAKGVETAIGVLTGAKPTKYVNTGVVF
VTSANLDSPEAKQVLY
>Mature_336_residues
MIRAVCCSVARRPITRRKQESNMRRLLCAATMLCAAVAVGQAHAADRGIAVIVKTANSNYWQNVRKGAADAVAKVENYTM
TFQGPTSESAVADQVNMVADAVTQKVAAIVLAPSDPDALVPSIRKAWEAHIPVVLIDSMISDSGAKYYQSFLATDNEAAG
EALGKEMVDHVGQTGKVAIMSYVPGVGSEIGRVGGFRKYIAEHSHIQIVGPFYSQSQMALAMNQTTDVLASNPDLKGIFA
ANEMTAVGVGRAIQQAGKSGKLYAIAFDGNEDEQGFVRSGTFQLLAVQGSYAMGAKGVETAIGVLTGAKPTKYVNTGVVF
VTSANLDSPEAKQVLY

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=290, Percent_Identity=28.9655172413793, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1790526, Length=258, Percent_Identity=27.906976744186, Blast_Score=98, Evalue=6e-22,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 35513; Mature: 35513

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRAVCCSVARRPITRRKQESNMRRLLCAATMLCAAVAVGQAHAADRGIAVIVKTANSNY
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHH
WQNVRKGAADAVAKVENYTMTFQGPTSESAVADQVNMVADAVTQKVAAIVLAPSDPDALV
HHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHH
PSIRKAWEAHIPVVLIDSMISDSGAKYYQSFLATDNEAAGEALGKEMVDHVGQTGKVAIM
HHHHHHHHCCCCEEEEHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEE
SYVPGVGSEIGRVGGFRKYIAEHSHIQIVGPFYSQSQMALAMNQTTDVLASNPDLKGIFA
ECCCCCCHHHHHHCHHHHHHHCCCCEEEEECCCCCCCEEEECCCCHHHHCCCCCCCEEEE
ANEMTAVGVGRAIQQAGKSGKLYAIAFDGNEDEQGFVRSGTFQLLAVQGSYAMGAKGVET
CCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEECCCEEEEEEECCCCCCCCHHHH
AIGVLTGAKPTKYVNTGVVFVTSANLDSPEAKQVLY
HHHHHCCCCCCCEECCCEEEEEECCCCCCCHHHCCC
>Mature Secondary Structure
MIRAVCCSVARRPITRRKQESNMRRLLCAATMLCAAVAVGQAHAADRGIAVIVKTANSNY
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHH
WQNVRKGAADAVAKVENYTMTFQGPTSESAVADQVNMVADAVTQKVAAIVLAPSDPDALV
HHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHH
PSIRKAWEAHIPVVLIDSMISDSGAKYYQSFLATDNEAAGEALGKEMVDHVGQTGKVAIM
HHHHHHHHCCCCEEEEHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEE
SYVPGVGSEIGRVGGFRKYIAEHSHIQIVGPFYSQSQMALAMNQTTDVLASNPDLKGIFA
ECCCCCCHHHHHHCHHHHHHHCCCCEEEEECCCCCCCEEEECCCCHHHHCCCCCCCEEEE
ANEMTAVGVGRAIQQAGKSGKLYAIAFDGNEDEQGFVRSGTFQLLAVQGSYAMGAKGVET
CCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEECCCEEEEEEECCCCCCCCHHHH
AIGVLTGAKPTKYVNTGVVFVTSANLDSPEAKQVLY
HHHHHCCCCCCCEECCCEEEEEECCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]