Click here to switch to the map view.

The map label for this gene is ycjP [C]

Identifier: 162148417

GI number: 162148417

Start: 2730426

End: 2731253

Strand: Direct

Name: ycjP [C]

Synonym: GDI_2636

Alternate gene names: 162148417

Gene position: 2730426-2731253 (Clockwise)

Preceding gene: 162148416

Following gene: 162148418

Centisome position: 69.23

GC content: 65.34

Gene sequence:

>828_bases
ATGACCAGGAACCGCGCGCGCCTGAACCGCATCGGCATCGGCGTCCTGGCCTGGGCCGTCGCGCTGTGGGTGTTCTTCCC
CATCCTGTGGATGCTGCTGACCGGCTTCAAGACCGAACCCGACGCCATTTCCACGCCGCCGCACCTGTTCTTCCACCCGA
CGCTGTCCAGCTATCGCGAGGTCTTCGCGCGCGAGAATTACTGGCACTTCGCCCTGAACAGCGTCGCGATTTCGCTCTTT
TCCAGCATTGTCGCGATCCTGCTGTCGATCCCGGCGGCCTACGCCATGGCCTTCCTGCCCGGCCGACGCACGCGCGGCAC
GCTGCTGTGGATGCTGTCCACCCGCATGCTGCCGCCCGTGGGCGTGCTGGTGCCGATCTACCTGCTGGCCCGCAGCAGCG
GCCTGCTGGACACCCGCACCGGGCTGATCGTGATCTATACGCTGACGAACCTGCCGATCATGGTCTGGATGCTGTACACC
TTCTTTCGCGAGGTACCGGTCCCGATCCTGGAGGCGGGGCGCATGGACGGCGCCACGCGCTGGCAGGAAATCACCCAGGT
TTTGGCACCGCTGGCTCTGCCCGGCATCGCCTCGACCGGGCTGCTGTCGATGATCCTGTGCTGGAACGAGGCGTTCTGGT
CCCTGAACCTGACATCGTCCAACGCCGCGCCGCTGCCGACCTTCATCGCTTCCTTCTCGTCGCCCGAGGGGCTGTTCTTC
GCCAAGCTGTCCGCTGCCTCGACGCTGGCGGTCGCCCCCATCCTGGTCTTCGGATGGCTAAGCCAGAAACAGCTTGTCCG
CGGACTGACCTTCGGCGCGGTCAAATAA

Upstream 100 bases:

>100_bases
GGCGGCGCGTCGGCGGGCGGCATGGTCGCCATCGTCATCGCCAACATCGTGGCGGCGTTCCTGCTGCGCGCCGTCGCCCG
CAACCTGGAGGCCTGACATC

Downstream 100 bases:

>100_bases
GCGAATCATTCAGGGCCTGAAACGTATCTGGGGGGGGTGTCATGGCAACAGTGGAACTGCGGAACATCCGCAAGACCTAT
TCGGACGAGGAGATCATCAA

Product: transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MTRNRARLNRIGIGVLAWAVALWVFFPILWMLLTGFKTEPDAISTPPHLFFHPTLSSYREVFARENYWHFALNSVAISLF
SSIVAILLSIPAAYAMAFLPGRRTRGTLLWMLSTRMLPPVGVLVPIYLLARSSGLLDTRTGLIVIYTLTNLPIMVWMLYT
FFREVPVPILEAGRMDGATRWQEITQVLAPLALPGIASTGLLSMILCWNEAFWSLNLTSSNAAPLPTFIASFSSPEGLFF
AKLSAASTLAVAPILVFGWLSQKQLVRGLTFGAVK

Sequences:

>Translated_275_residues
MTRNRARLNRIGIGVLAWAVALWVFFPILWMLLTGFKTEPDAISTPPHLFFHPTLSSYREVFARENYWHFALNSVAISLF
SSIVAILLSIPAAYAMAFLPGRRTRGTLLWMLSTRMLPPVGVLVPIYLLARSSGLLDTRTGLIVIYTLTNLPIMVWMLYT
FFREVPVPILEAGRMDGATRWQEITQVLAPLALPGIASTGLLSMILCWNEAFWSLNLTSSNAAPLPTFIASFSSPEGLFF
AKLSAASTLAVAPILVFGWLSQKQLVRGLTFGAVK
>Mature_274_residues
TRNRARLNRIGIGVLAWAVALWVFFPILWMLLTGFKTEPDAISTPPHLFFHPTLSSYREVFARENYWHFALNSVAISLFS
SIVAILLSIPAAYAMAFLPGRRTRGTLLWMLSTRMLPPVGVLVPIYLLARSSGLLDTRTGLIVIYTLTNLPIMVWMLYTF
FREVPVPILEAGRMDGATRWQEITQVLAPLALPGIASTGLLSMILCWNEAFWSLNLTSSNAAPLPTFIASFSSPEGLFFA
KLSAASTLAVAPILVFGWLSQKQLVRGLTFGAVK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=282, Percent_Identity=32.2695035460993, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1790464, Length=212, Percent_Identity=33.9622641509434, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30464; Mature: 30332

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRNRARLNRIGIGVLAWAVALWVFFPILWMLLTGFKTEPDAISTPPHLFFHPTLSSYRE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHH
VFARENYWHFALNSVAISLFSSIVAILLSIPAAYAMAFLPGRRTRGTLLWMLSTRMLPPV
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHCCCCCH
GVLVPIYLLARSSGLLDTRTGLIVIYTLTNLPIMVWMLYTFFREVPVPILEAGRMDGATR
HHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHH
WQEITQVLAPLALPGIASTGLLSMILCWNEAFWSLNLTSSNAAPLPTFIASFSSPEGLFF
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHCCCCCCEEE
AKLSAASTLAVAPILVFGWLSQKQLVRGLTFGAVK
EEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
TRNRARLNRIGIGVLAWAVALWVFFPILWMLLTGFKTEPDAISTPPHLFFHPTLSSYRE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHH
VFARENYWHFALNSVAISLFSSIVAILLSIPAAYAMAFLPGRRTRGTLLWMLSTRMLPPV
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHCCCCCH
GVLVPIYLLARSSGLLDTRTGLIVIYTLTNLPIMVWMLYTFFREVPVPILEAGRMDGATR
HHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHH
WQEITQVLAPLALPGIASTGLLSMILCWNEAFWSLNLTSSNAAPLPTFIASFSSPEGLFF
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHCCCCCCEEE
AKLSAASTLAVAPILVFGWLSQKQLVRGLTFGAVK
EEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]