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The map label for this gene is ycjO [C]

Identifier: 162148416

GI number: 162148416

Start: 2729477

End: 2730421

Strand: Direct

Name: ycjO [C]

Synonym: GDI_2635

Alternate gene names: 162148416

Gene position: 2729477-2730421 (Clockwise)

Preceding gene: 162148415

Following gene: 162148417

Centisome position: 69.2

GC content: 66.77

Gene sequence:

>945_bases
ATGGGTGGCATGACCGGAACGATCGACCTGACTCCCCCCGTGGTCCCCCCTGGCGGCGTGGTCCCGCCCGGGGGCGCGGC
CCGCGCCCGGCGGCATGAAGGAATGCTGCTGCAATCCCCGGCGGTGATCCTGCTGCTGGTGTGGTCGCTGGTCCCGCTGG
CGATGACGCTGTGGTACTCGCTGCGCAACTACAACCTGGTCGATCCGACGTTGCAGGGATTCGCCGGCATCAGCAATTAC
CGCTACCTGCTGACCGACCCCGACTTCCTGACCGCGCTGCTCAATACCGGCCTGCTGGTCGGCGGCGTGCTGGTCATCAC
CGTCGGACTGGGCACGCTGCTGGCCGTCCTGTACGACCAGCCGTTCCTGGGACAGGGCGTTGCCCGCGTCCTGGTCATTT
CGCCGTTCTTCATCATGCCCACCGTGTCCGCCCTGTTGTGGAAGAACCTGATGCTGCACCCGATCTATGGCGTGTATTCC
GCCATGATGCGGGCGGTCGGGCTGACGCCGGTGGACTGGCTGTCGCGCTATCCGCTCGCGACGCTGATCATGATCGTGTC
GTGGGAATGGCTGCCGTTCGCGATCCTGATCCTGCTGACGGCGATCCAGTCGCTGGATTCCGAGCAGAAGGAAGCCGCGC
GCATGGACGGCGCCGGGCCCGTCGCCCAGTTCCGCTACATCATCCTGCCGCACCTGTCGCGCGCGATCACGGTCGTCATC
ATGATCGAGACGATCTTCCTGCTGGCGATCTTCGCCGAAATCTCGGTCACCACGGCGGGCGGTCCCGGGGTCGCGTCCAC
CAACCTGGCCTTCCTGATCTATGCCCGCGCGCTGCTGCAGTTCGATGTCGGCGGCGCGTCGGCGGGCGGCATGGTCGCCA
TCGTCATCGCCAACATCGTGGCGGCGTTCCTGCTGCGCGCCGTCGCCCGCAACCTGGAGGCCTGA

Upstream 100 bases:

>100_bases
GACGGTCGAGCAAACCCAGGCCTCGGCCCAGGCGTTGGTGACACGCACCATGCGGCAGGCAGGCCTGCTGCATTAGATCC
CGACGCGCAAGGAGCGGATC

Downstream 100 bases:

>100_bases
CATCATGACCAGGAACCGCGCGCGCCTGAACCGCATCGGCATCGGCGTCCTGGCCTGGGCCGTCGCGCTGTGGGTGTTCT
TCCCCATCCTGTGGATGCTG

Product: transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MGGMTGTIDLTPPVVPPGGVVPPGGAARARRHEGMLLQSPAVILLLVWSLVPLAMTLWYSLRNYNLVDPTLQGFAGISNY
RYLLTDPDFLTALLNTGLLVGGVLVITVGLGTLLAVLYDQPFLGQGVARVLVISPFFIMPTVSALLWKNLMLHPIYGVYS
AMMRAVGLTPVDWLSRYPLATLIMIVSWEWLPFAILILLTAIQSLDSEQKEAARMDGAGPVAQFRYIILPHLSRAITVVI
MIETIFLLAIFAEISVTTAGGPGVASTNLAFLIYARALLQFDVGGASAGGMVAIVIANIVAAFLLRAVARNLEA

Sequences:

>Translated_314_residues
MGGMTGTIDLTPPVVPPGGVVPPGGAARARRHEGMLLQSPAVILLLVWSLVPLAMTLWYSLRNYNLVDPTLQGFAGISNY
RYLLTDPDFLTALLNTGLLVGGVLVITVGLGTLLAVLYDQPFLGQGVARVLVISPFFIMPTVSALLWKNLMLHPIYGVYS
AMMRAVGLTPVDWLSRYPLATLIMIVSWEWLPFAILILLTAIQSLDSEQKEAARMDGAGPVAQFRYIILPHLSRAITVVI
MIETIFLLAIFAEISVTTAGGPGVASTNLAFLIYARALLQFDVGGASAGGMVAIVIANIVAAFLLRAVARNLEA
>Mature_313_residues
GGMTGTIDLTPPVVPPGGVVPPGGAARARRHEGMLLQSPAVILLLVWSLVPLAMTLWYSLRNYNLVDPTLQGFAGISNYR
YLLTDPDFLTALLNTGLLVGGVLVITVGLGTLLAVLYDQPFLGQGVARVLVISPFFIMPTVSALLWKNLMLHPIYGVYSA
MMRAVGLTPVDWLSRYPLATLIMIVSWEWLPFAILILLTAIQSLDSEQKEAARMDGAGPVAQFRYIILPHLSRAITVVIM
IETIFLLAIFAEISVTTAGGPGVASTNLAFLIYARALLQFDVGGASAGGMVAIVIANIVAAFLLRAVARNLEA

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=260, Percent_Identity=27.6923076923077, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1789861, Length=285, Percent_Identity=24.9122807017544, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790465, Length=233, Percent_Identity=27.4678111587983, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33613; Mature: 33481

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGMTGTIDLTPPVVPPGGVVPPGGAARARRHEGMLLQSPAVILLLVWSLVPLAMTLWYS
CCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHHH
LRNYNLVDPTLQGFAGISNYRYLLTDPDFLTALLNTGLLVGGVLVITVGLGTLLAVLYDQ
HHCCCCCCHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PFLGQGVARVLVISPFFIMPTVSALLWKNLMLHPIYGVYSAMMRAVGLTPVDWLSRYPLA
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHH
TLIMIVSWEWLPFAILILLTAIQSLDSEQKEAARMDGAGPVAQFRYIILPHLSRAITVVI
HHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
MIETIFLLAIFAEISVTTAGGPGVASTNLAFLIYARALLQFDVGGASAGGMVAIVIANIV
HHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
AAFLLRAVARNLEA
HHHHHHHHHHHCCC
>Mature Secondary Structure 
GGMTGTIDLTPPVVPPGGVVPPGGAARARRHEGMLLQSPAVILLLVWSLVPLAMTLWYS
CCCCEEEECCCCCCCCCCCCCCCCHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHHH
LRNYNLVDPTLQGFAGISNYRYLLTDPDFLTALLNTGLLVGGVLVITVGLGTLLAVLYDQ
HHCCCCCCHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PFLGQGVARVLVISPFFIMPTVSALLWKNLMLHPIYGVYSAMMRAVGLTPVDWLSRYPLA
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHH
TLIMIVSWEWLPFAILILLTAIQSLDSEQKEAARMDGAGPVAQFRYIILPHLSRAITVVI
HHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
MIETIFLLAIFAEISVTTAGGPGVASTNLAFLIYARALLQFDVGGASAGGMVAIVIANIV
HHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
AAFLLRAVARNLEA
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]