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The map label for this gene is yciR [C]

Identifier: 162148351

GI number: 162148351

Start: 2661310

End: 2663394

Strand: Reverse

Name: yciR [C]

Synonym: GDI_2568

Alternate gene names: 162148351

Gene position: 2663394-2661310 (Counterclockwise)

Preceding gene: 162148352

Following gene: 162148350

Centisome position: 67.53

GC content: 66.0

Gene sequence:

>2085_bases
ATGAGGACGATCTTCGGCTGCATCATCGCTGAACACAGCCTGTCCCTGGTGATCGCCGCCGGGCTGCTCTGCGGCCTGGG
GTCCTGGGTGACGGCGCGGCTGTTCTTCCGCACGCTCGATACGACCGGGCTGCAGAAGTATGGCTGGCACTTCCTGACGG
CCCTGACCGCGGCGGTGTCGATCTGGTGTACCCACTTCATCGCCATGCTTGGATTTCATCCTGGCGTTCCCGTGGGGTTC
GATCCGGTCCTGACCATCGTATCCCTGCTGATCGCGGTCATCGGCAGCACGGCCGGCTTCGTCCTGGCCGGAAACCGCGG
GACGGGGCTGGCGCCCGCATTGGGCGGTGGGATCGTCGGCCTGTCGATTGCCGCCATGCACTATACCGGGATGACGGCCT
ATCGCGTGCAGGGCGTCATGTCGTGGGACAGGCGTCTTCTCGTCGTATCCATCGTGCTTGCCGTCGGCCTGTCGGCGGTG
GCACTGCAGGTCGCCGCGCGGCGGGGCCGGCAGGCCCGCAACCTGATGGCCGGCCTGCTGGTGCTGGCGACCATCGGGCT
GCATTTCACCGGCATGGCCGCGCTGCGCATCACGCCCGCGCCCATCGACGGGTCGTTCGCCAATCCCGAGGCATTGCATG
CCCTGGCATTGGCGATCACCGCTACGGCGCTGGTCATCGTCGGCGCCGGGCTGGCGAGTTACCTGATCGACGACAGCGTC
CGGGCCGAAACCGTGGAGCGACTGCATCATATAGCGATGAACGACACGCTGACCGGCCTTCCGAACCGCGCCAGCTTCAA
CGACCGTCTCGATTCCGAGATCGCGTTGGCACGGGAGAATAAGGGCACGTTCGCCTTTATCGGCATCGATCTCAATCGCT
TCAAGGAAATCAACGATCTGCGCGGTCATGCGGCGGGGGACGAGGTGCTGCGCATCCTCGGCCGGCGCCTCAAGGGATTA
CTGCGCGACGGCGAGTTCGTCGCCCGGACCGGCGGTGACGAGTTCGCGGCCCTGTATCGCATGGGGGACAGGCGGGACCT
TTCCGACTTTCTCGGACGCCTGGAACGCGCCCTGTTCAAGCCCCTGCGGCTTGATGGATTCGAGGTCCAGTCAGGCGGCA
GCCTGGGCGTGGCCATCTGGCCCGACGACACCGCCGACAAGGAAATGCTGGCGAACAACGCCGACCTGGCCATGTATCGC
GCCAAGGCCGATCCGATCCGGAAGATCTGCTTCTACAAGCCCGAGATGGACGAGGCCCTTCGCGCCCGTCGCATCCTCGC
CGCCGACCTGCGCGACGCGCTGGCGCGCGACCAGCTCTCGCTGCACTACCAGGTCCAGACGTCGATCGCGACCGGCCGGA
TTCGTGGCTACGAGGCCCTGCTGCGCTGGGAGCACCCGCAGATCGGTTCGATCTCGCCGGCCGAGTTCATCCCCCTTGCG
GAAGAAAACGGCCTGATCCTTCCGATCGGCGAATGGGTCCTGCGAACCGCCTGCCGGGAAGCCGCGTCGTGGGAGCCGCC
CTACAAGATCGCGGTGAATCTCTCGGCGGTGCAGTTCGTGCATGCCGATCTGGCGAAGCTGGTCCGGACCGTGCTGGCCG
AAACGGGGCTGTCGCCCGAACGGCTGGAACTGGAACTGACCGAAACGACGATCTTCGCGGACCAGAAGCGTGCGTTGCAC
GTGCTGCGCGAAATCAAGGCGCTGGGGGTCACCATCGCGCTCGACGATTTCGGAACGGGGTATTCCTCGCTCGATACCCT
TCGTGCCTTTTCCTTCGACCGGATCAAGATCGACCGTTCGTTCTGCTGCGCGGCGGCGGCCAATCCGCAGACGCTGGCCA
TCATCCGGGCCGTGCTCGGCCTCGGCAAATCCTTCGGCATTCCCGTGCTCGCCGAGGGAATCGAGACGTATGACCAGCTT
TCCATGCTGAACAGCGAAGGGTGCGACGAGGCCCAGGGCTTCCTGCTTGGCCGGCCGGCCCCGCTCGGGCAGATCGTCGG
AAGCGGGCAGATCACGCTGACCCGCGAAAGCCGAACCCTCCGCGACGGGAACGGGGCGTCCGCCCGTGCCGAATTCGCCC
GCTGA

Upstream 100 bases:

>100_bases
TTCCGGTCGATCTACAATCGTATTACTTCGCGTCACTGGCCCTGCTTGTGGCGCTATGCGGCGGGACCGCGATCGTCGCC
AGGGTTGCGTCGCACCTTCG

Downstream 100 bases:

>100_bases
CGCCACCACCGACCAAGCCATGCCCATGAGCGGCGGCGTGAGGACCTGATGAATCCGAAATCGATCTGCGCCGGAATTGC
GACGTTCCTGTCGGTGCGCA

Product: GGDEF family signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 694; Mature: 694

Protein sequence:

>694_residues
MRTIFGCIIAEHSLSLVIAAGLLCGLGSWVTARLFFRTLDTTGLQKYGWHFLTALTAAVSIWCTHFIAMLGFHPGVPVGF
DPVLTIVSLLIAVIGSTAGFVLAGNRGTGLAPALGGGIVGLSIAAMHYTGMTAYRVQGVMSWDRRLLVVSIVLAVGLSAV
ALQVAARRGRQARNLMAGLLVLATIGLHFTGMAALRITPAPIDGSFANPEALHALALAITATALVIVGAGLASYLIDDSV
RAETVERLHHIAMNDTLTGLPNRASFNDRLDSEIALARENKGTFAFIGIDLNRFKEINDLRGHAAGDEVLRILGRRLKGL
LRDGEFVARTGGDEFAALYRMGDRRDLSDFLGRLERALFKPLRLDGFEVQSGGSLGVAIWPDDTADKEMLANNADLAMYR
AKADPIRKICFYKPEMDEALRARRILAADLRDALARDQLSLHYQVQTSIATGRIRGYEALLRWEHPQIGSISPAEFIPLA
EENGLILPIGEWVLRTACREAASWEPPYKIAVNLSAVQFVHADLAKLVRTVLAETGLSPERLELELTETTIFADQKRALH
VLREIKALGVTIALDDFGTGYSSLDTLRAFSFDRIKIDRSFCCAAAANPQTLAIIRAVLGLGKSFGIPVLAEGIETYDQL
SMLNSEGCDEAQGFLLGRPAPLGQIVGSGQITLTRESRTLRDGNGASARAEFAR

Sequences:

>Translated_694_residues
MRTIFGCIIAEHSLSLVIAAGLLCGLGSWVTARLFFRTLDTTGLQKYGWHFLTALTAAVSIWCTHFIAMLGFHPGVPVGF
DPVLTIVSLLIAVIGSTAGFVLAGNRGTGLAPALGGGIVGLSIAAMHYTGMTAYRVQGVMSWDRRLLVVSIVLAVGLSAV
ALQVAARRGRQARNLMAGLLVLATIGLHFTGMAALRITPAPIDGSFANPEALHALALAITATALVIVGAGLASYLIDDSV
RAETVERLHHIAMNDTLTGLPNRASFNDRLDSEIALARENKGTFAFIGIDLNRFKEINDLRGHAAGDEVLRILGRRLKGL
LRDGEFVARTGGDEFAALYRMGDRRDLSDFLGRLERALFKPLRLDGFEVQSGGSLGVAIWPDDTADKEMLANNADLAMYR
AKADPIRKICFYKPEMDEALRARRILAADLRDALARDQLSLHYQVQTSIATGRIRGYEALLRWEHPQIGSISPAEFIPLA
EENGLILPIGEWVLRTACREAASWEPPYKIAVNLSAVQFVHADLAKLVRTVLAETGLSPERLELELTETTIFADQKRALH
VLREIKALGVTIALDDFGTGYSSLDTLRAFSFDRIKIDRSFCCAAAANPQTLAIIRAVLGLGKSFGIPVLAEGIETYDQL
SMLNSEGCDEAQGFLLGRPAPLGQIVGSGQITLTRESRTLRDGNGASARAEFAR
>Mature_694_residues
MRTIFGCIIAEHSLSLVIAAGLLCGLGSWVTARLFFRTLDTTGLQKYGWHFLTALTAAVSIWCTHFIAMLGFHPGVPVGF
DPVLTIVSLLIAVIGSTAGFVLAGNRGTGLAPALGGGIVGLSIAAMHYTGMTAYRVQGVMSWDRRLLVVSIVLAVGLSAV
ALQVAARRGRQARNLMAGLLVLATIGLHFTGMAALRITPAPIDGSFANPEALHALALAITATALVIVGAGLASYLIDDSV
RAETVERLHHIAMNDTLTGLPNRASFNDRLDSEIALARENKGTFAFIGIDLNRFKEINDLRGHAAGDEVLRILGRRLKGL
LRDGEFVARTGGDEFAALYRMGDRRDLSDFLGRLERALFKPLRLDGFEVQSGGSLGVAIWPDDTADKEMLANNADLAMYR
AKADPIRKICFYKPEMDEALRARRILAADLRDALARDQLSLHYQVQTSIATGRIRGYEALLRWEHPQIGSISPAEFIPLA
EENGLILPIGEWVLRTACREAASWEPPYKIAVNLSAVQFVHADLAKLVRTVLAETGLSPERLELELTETTIFADQKRALH
VLREIKALGVTIALDDFGTGYSSLDTLRAFSFDRIKIDRSFCCAAAANPQTLAIIRAVLGLGKSFGIPVLAEGIETYDQL
SMLNSEGCDEAQGFLLGRPAPLGQIVGSGQITLTRESRTLRDGNGASARAEFAR

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=429, Percent_Identity=35.8974358974359, Blast_Score=275, Evalue=8e-75,
Organism=Escherichia coli, GI87081921, Length=431, Percent_Identity=30.3944315545244, Blast_Score=219, Evalue=6e-58,
Organism=Escherichia coli, GI226510982, Length=443, Percent_Identity=28.2167042889391, Blast_Score=163, Evalue=4e-41,
Organism=Escherichia coli, GI87081743, Length=244, Percent_Identity=34.8360655737705, Blast_Score=139, Evalue=7e-34,
Organism=Escherichia coli, GI1790496, Length=235, Percent_Identity=32.3404255319149, Blast_Score=135, Evalue=6e-33,
Organism=Escherichia coli, GI1788502, Length=266, Percent_Identity=33.0827067669173, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI87081845, Length=235, Percent_Identity=34.0425531914894, Blast_Score=132, Evalue=1e-31,
Organism=Escherichia coli, GI1786507, Length=226, Percent_Identity=34.5132743362832, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI1787055, Length=253, Percent_Identity=32.8063241106719, Blast_Score=125, Evalue=8e-30,
Organism=Escherichia coli, GI87081980, Length=242, Percent_Identity=30.5785123966942, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1788849, Length=269, Percent_Identity=32.3420074349442, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87082096, Length=443, Percent_Identity=24.3792325056433, Blast_Score=106, Evalue=5e-24,
Organism=Escherichia coli, GI1788381, Length=463, Percent_Identity=25.0539956803456, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87081977, Length=152, Percent_Identity=34.8684210526316, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI87081881, Length=195, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1786584, Length=163, Percent_Identity=34.3558282208589, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1788956, Length=163, Percent_Identity=34.3558282208589, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787410, Length=150, Percent_Identity=28.6666666666667, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI145693134, Length=178, Percent_Identity=31.4606741573034, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 74979; Mature: 74979

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS50924 MHYT ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTIFGCIIAEHSLSLVIAAGLLCGLGSWVTARLFFRTLDTTGLQKYGWHFLTALTAAVS
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
IWCTHFIAMLGFHPGVPVGFDPVLTIVSLLIAVIGSTAGFVLAGNRGTGLAPALGGGIVG
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHCCCHHH
LSIAAMHYTGMTAYRVQGVMSWDRRLLVVSIVLAVGLSAVALQVAARRGRQARNLMAGLL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
VLATIGLHFTGMAALRITPAPIDGSFANPEALHALALAITATALVIVGAGLASYLIDDSV
HHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
RAETVERLHHIAMNDTLTGLPNRASFNDRLDSEIALARENKGTFAFIGIDLNRFKEINDL
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHH
RGHAAGDEVLRILGRRLKGLLRDGEFVARTGGDEFAALYRMGDRRDLSDFLGRLERALFK
CCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHC
PLRLDGFEVQSGGSLGVAIWPDDTADKEMLANNADLAMYRAKADPIRKICFYKPEMDEAL
CCCCCCEEEECCCCEEEEECCCCCCCHHHHCCCCCEEEEECCCCHHHHHHCCCCCHHHHH
RARRILAADLRDALARDQLSLHYQVQTSIATGRIRGYEALLRWEHPQIGSISPAEFIPLA
HHHHHHHHHHHHHHHHHHHEEEEEEEEEHHHCHHHHHHHHHCCCCCCCCCCCHHHCCEEC
EENGLILPIGEWVLRTACREAASWEPPYKIAVNLSAVQFVHADLAKLVRTVLAETGLSPE
CCCCEEEEHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCH
RLELELTETTIFADQKRALHVLREIKALGVTIALDDFGTGYSSLDTLRAFSFDRIKIDRS
HEEEEEEHHEEEHHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHCCCCEEEECCH
FCCAAAANPQTLAIIRAVLGLGKSFGIPVLAEGIETYDQLSMLNSEGCDEAQGFLLGRPA
HHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCC
PLGQIVGSGQITLTRESRTLRDGNGASARAEFAR
CHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRTIFGCIIAEHSLSLVIAAGLLCGLGSWVTARLFFRTLDTTGLQKYGWHFLTALTAAVS
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
IWCTHFIAMLGFHPGVPVGFDPVLTIVSLLIAVIGSTAGFVLAGNRGTGLAPALGGGIVG
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHCCCHHH
LSIAAMHYTGMTAYRVQGVMSWDRRLLVVSIVLAVGLSAVALQVAARRGRQARNLMAGLL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
VLATIGLHFTGMAALRITPAPIDGSFANPEALHALALAITATALVIVGAGLASYLIDDSV
HHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
RAETVERLHHIAMNDTLTGLPNRASFNDRLDSEIALARENKGTFAFIGIDLNRFKEINDL
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHH
RGHAAGDEVLRILGRRLKGLLRDGEFVARTGGDEFAALYRMGDRRDLSDFLGRLERALFK
CCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHC
PLRLDGFEVQSGGSLGVAIWPDDTADKEMLANNADLAMYRAKADPIRKICFYKPEMDEAL
CCCCCCEEEECCCCEEEEECCCCCCCHHHHCCCCCEEEEECCCCHHHHHHCCCCCHHHHH
RARRILAADLRDALARDQLSLHYQVQTSIATGRIRGYEALLRWEHPQIGSISPAEFIPLA
HHHHHHHHHHHHHHHHHHHEEEEEEEEEHHHCHHHHHHHHHCCCCCCCCCCCHHHCCEEC
EENGLILPIGEWVLRTACREAASWEPPYKIAVNLSAVQFVHADLAKLVRTVLAETGLSPE
CCCCEEEEHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCH
RLELELTETTIFADQKRALHVLREIKALGVTIALDDFGTGYSSLDTLRAFSFDRIKIDRS
HEEEEEEHHEEEHHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHCCCCEEEECCH
FCCAAAANPQTLAIIRAVLGLGKSFGIPVLAEGIETYDQLSMLNSEGCDEAQGFLLGRPA
HHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCC
PLGQIVGSGQITLTRESRTLRDGNGASARAEFAR
CHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]