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The map label for this gene is yciR [C]

Identifier: 162148350

GI number: 162148350

Start: 2658943

End: 2661261

Strand: Reverse

Name: yciR [C]

Synonym: GDI_2567

Alternate gene names: 162148350

Gene position: 2661261-2658943 (Counterclockwise)

Preceding gene: 162148351

Following gene: 162148349

Centisome position: 67.47

GC content: 65.72

Gene sequence:

>2319_bases
ATGAATCCGAAATCGATCTGCGCCGGAATTGCGACGTTCCTGTCGGTGCGCACCGGTAACCCCGAACTGCTGAAGGCGCA
ATTCGCGGCGCTCTCGCGCCTTATCCCGCTGATGTATTTCATCCTGGTGGCCGATGCCTGGGTCCTGGCCGGGACCTTCA
TCCATCGGGCGCCGCTGTGGCTGACCCTGTATGCGTCCCTGCTGCTGACCGCCATATGCCTGTCGCGCCTGGTCGTGTGG
TGGAAGAAGAGAAACGTCGCGTTGACGGTGGAAACGGCCTTCGCGGAACTGCGACGCGCCAATCGCGTGGCCGCGGCCCT
GACGGTGGTCTTTCCGGCCTGGGCATTCGCGCTGTTTTCCTATGGCGACGCGCTGGAACAGAGCCACGTCGCGTTCTTCC
TGGTGATTTCCATCCTGGGCACGATGTTCTGCCTGATCCACCTGCGCTCGGCCGCCCTGATCGTCGCCGCTGTCGCCGGG
AGCGCCTTCGTGGTCTTCTTCGCTTCGACGGGACAGCCCGTGTTCATCGGCATGGCGGTCAACGTCGTGTTCGTGATCGG
GGCCTCGGTGGTCGTGGTGCTGATCCAGAACCGCGACTTCGTCCGCATGGTCAACGCGTCGATCGCGGCACGGTCCAAGG
AACAGGCGCAGAACCGGCTGCTGCGCATGATCGACGACATGCCGGTCGCGGTGATGACGGTCGAACCCGATACGCTGAAG
ATCAATTACGTCAACGAGACCTCGAAACGCCTGGTCCGGCGGATCGAGCACCTGCTGCCGATCAAGGCCGACGACCTGCC
GGGCACCTGTATCGACGTCTTTCACAGGCACCCGCAACACCAGCGCCGGATTCTGGGCGACCCCGCGAACCTTCCGCACA
ACGCCCGCATCAGCCTCGGTCCCGAGGTCATCGACCTGAAGGTTTCCGCCGTCACGGACACGGACGGGACGTATATCGGC
CCCATGCTGACCTGGGCGCTCGTGACCAAGGAGGCGGAGTCCGAACGGCGCATCTTCCAGATGGCCCATTACGACATCCT
GACCGGGCTTCCGAACCGCATCACGTTCCACGAGGAACTGGACAAGCGCCTGGGCACGCCCGGGAACCGGGTCGGACTGC
TGTTCGTGGATCTGGACGGCTTCAAGCTGGTGAATGATACAAGGGGGCATCGGATCGGCGATATCCTGCTCACCCAGGTG
GCAAGCCGCCTGCGCGCGACGTGCAACAGCCCGGCGACCGTCGTCGGACGGCTGGGAGGGGACGAGTTCGCCGTCCTCGT
TCCGCACGACAACGCGGAAGAGGCCGCGTTGCTGGCCGCGCGTGTCGTCGCCTTCCTGAGCGAGCCCTATGACCTCGATT
ACGACCGGAGCATCCAGATCACCGCGTCCGTCGGCATCGCCCTGGCGCCGCTCCATGGCGAGGACGGGGAAACGCTGCTG
AGCCGGGCTGATATCGCCCTCCATGTGGCCAAGACCGCCGGAAAGGGAGAGTTCCGGATGTTCCAGCCCGAGATGGAGGC
CCGCATCCAGGAGCGTATGCGCCTGGAAGCCAGGCTGCAGGCTACGCTGAAAAGCGAGGAGGGGCTGTTCGTCTTCTACC
AGTCGATCATCGGCATCGACAGCGGCACCGTGACGGCCCGCGAAGCCCTGGTGCGGTGGTACCATCCCGAGCGCGGCTGG
ATTTCGCCCGGCGAGTTCGTGCCGGTGGCCGAGCAAAGCGGCCTGATCGACCAGCTCGGCGGTTTCGTGCTGAATACGGC
CTGCCGCGACGCGGCCCGCTGGACCGATGGCGCGCGCGTCGCGGTGAATATTTCCGCCAGCCAGATCGGCAAGGGAACGC
TCGTCCCGTCCATCCTCGCAGCCCTGGAGGCCTCCGGCCTGCCGCCCGAGCGGCTGGAAATCGAGGTGACCGAAACGGCC
CTTCTCTACGACGAACGGGATACGACCGCCGAACTGCAGCAATTGCGGAAGCTGGGCGTCCGGGTGGCGCTCGACGATTT
CGGGACGGGCTATTCCTCGCTGGCCCATCTGCGGGCCTTCCCGTTCGACAAGATCAAGATCGACGGTTCGTTCGTGCGCG
ATGCCGTCGACCGGCCCGATTGCGCCGCCGTGGTGCAGGTGGTGGCCAGCCTGGGCAAGCGTCTGGGCGTGACCACGGTC
GCCGAGGGTGTCGAGACCCAGGCCCATCTCGACCGGGTCCGCGAGGAAGGCTGCACCGAGGTCCAGGGCTACCTTTTCGG
CCGGCTCAAGCCGGACGAACGGGACGCCCCGCTGGTCGAGGAACTGAACCGGCGGGCGCGCGAAGCCGCGACGGCCTGA

Upstream 100 bases:

>100_bases
AACCCTCCGCGACGGGAACGGGGCGTCCGCCCGTGCCGAATTCGCCCGCTGACGCCACCACCGACCAAGCCATGCCCATG
AGCGGCGGCGTGAGGACCTG

Downstream 100 bases:

>100_bases
CCCGGACGATCCCGCGCCAGAAAGACGAGGAACCTCCGCCGTCGGTTGAACCGTTATGCCCGATATCGTCCCCATTCCGG
GGGCCGGGTGTATGGGTTCT

Product: GGDEF family signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 772; Mature: 772

Protein sequence:

>772_residues
MNPKSICAGIATFLSVRTGNPELLKAQFAALSRLIPLMYFILVADAWVLAGTFIHRAPLWLTLYASLLLTAICLSRLVVW
WKKRNVALTVETAFAELRRANRVAAALTVVFPAWAFALFSYGDALEQSHVAFFLVISILGTMFCLIHLRSAALIVAAVAG
SAFVVFFASTGQPVFIGMAVNVVFVIGASVVVVLIQNRDFVRMVNASIAARSKEQAQNRLLRMIDDMPVAVMTVEPDTLK
INYVNETSKRLVRRIEHLLPIKADDLPGTCIDVFHRHPQHQRRILGDPANLPHNARISLGPEVIDLKVSAVTDTDGTYIG
PMLTWALVTKEAESERRIFQMAHYDILTGLPNRITFHEELDKRLGTPGNRVGLLFVDLDGFKLVNDTRGHRIGDILLTQV
ASRLRATCNSPATVVGRLGGDEFAVLVPHDNAEEAALLAARVVAFLSEPYDLDYDRSIQITASVGIALAPLHGEDGETLL
SRADIALHVAKTAGKGEFRMFQPEMEARIQERMRLEARLQATLKSEEGLFVFYQSIIGIDSGTVTAREALVRWYHPERGW
ISPGEFVPVAEQSGLIDQLGGFVLNTACRDAARWTDGARVAVNISASQIGKGTLVPSILAALEASGLPPERLEIEVTETA
LLYDERDTTAELQQLRKLGVRVALDDFGTGYSSLAHLRAFPFDKIKIDGSFVRDAVDRPDCAAVVQVVASLGKRLGVTTV
AEGVETQAHLDRVREEGCTEVQGYLFGRLKPDERDAPLVEELNRRAREAATA

Sequences:

>Translated_772_residues
MNPKSICAGIATFLSVRTGNPELLKAQFAALSRLIPLMYFILVADAWVLAGTFIHRAPLWLTLYASLLLTAICLSRLVVW
WKKRNVALTVETAFAELRRANRVAAALTVVFPAWAFALFSYGDALEQSHVAFFLVISILGTMFCLIHLRSAALIVAAVAG
SAFVVFFASTGQPVFIGMAVNVVFVIGASVVVVLIQNRDFVRMVNASIAARSKEQAQNRLLRMIDDMPVAVMTVEPDTLK
INYVNETSKRLVRRIEHLLPIKADDLPGTCIDVFHRHPQHQRRILGDPANLPHNARISLGPEVIDLKVSAVTDTDGTYIG
PMLTWALVTKEAESERRIFQMAHYDILTGLPNRITFHEELDKRLGTPGNRVGLLFVDLDGFKLVNDTRGHRIGDILLTQV
ASRLRATCNSPATVVGRLGGDEFAVLVPHDNAEEAALLAARVVAFLSEPYDLDYDRSIQITASVGIALAPLHGEDGETLL
SRADIALHVAKTAGKGEFRMFQPEMEARIQERMRLEARLQATLKSEEGLFVFYQSIIGIDSGTVTAREALVRWYHPERGW
ISPGEFVPVAEQSGLIDQLGGFVLNTACRDAARWTDGARVAVNISASQIGKGTLVPSILAALEASGLPPERLEIEVTETA
LLYDERDTTAELQQLRKLGVRVALDDFGTGYSSLAHLRAFPFDKIKIDGSFVRDAVDRPDCAAVVQVVASLGKRLGVTTV
AEGVETQAHLDRVREEGCTEVQGYLFGRLKPDERDAPLVEELNRRAREAATA
>Mature_772_residues
MNPKSICAGIATFLSVRTGNPELLKAQFAALSRLIPLMYFILVADAWVLAGTFIHRAPLWLTLYASLLLTAICLSRLVVW
WKKRNVALTVETAFAELRRANRVAAALTVVFPAWAFALFSYGDALEQSHVAFFLVISILGTMFCLIHLRSAALIVAAVAG
SAFVVFFASTGQPVFIGMAVNVVFVIGASVVVVLIQNRDFVRMVNASIAARSKEQAQNRLLRMIDDMPVAVMTVEPDTLK
INYVNETSKRLVRRIEHLLPIKADDLPGTCIDVFHRHPQHQRRILGDPANLPHNARISLGPEVIDLKVSAVTDTDGTYIG
PMLTWALVTKEAESERRIFQMAHYDILTGLPNRITFHEELDKRLGTPGNRVGLLFVDLDGFKLVNDTRGHRIGDILLTQV
ASRLRATCNSPATVVGRLGGDEFAVLVPHDNAEEAALLAARVVAFLSEPYDLDYDRSIQITASVGIALAPLHGEDGETLL
SRADIALHVAKTAGKGEFRMFQPEMEARIQERMRLEARLQATLKSEEGLFVFYQSIIGIDSGTVTAREALVRWYHPERGW
ISPGEFVPVAEQSGLIDQLGGFVLNTACRDAARWTDGARVAVNISASQIGKGTLVPSILAALEASGLPPERLEIEVTETA
LLYDERDTTAELQQLRKLGVRVALDDFGTGYSSLAHLRAFPFDKIKIDGSFVRDAVDRPDCAAVVQVVASLGKRLGVTTV
AEGVETQAHLDRVREEGCTEVQGYLFGRLKPDERDAPLVEELNRRAREAATA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=428, Percent_Identity=37.3831775700935, Blast_Score=280, Evalue=3e-76,
Organism=Escherichia coli, GI87081921, Length=432, Percent_Identity=31.0185185185185, Blast_Score=219, Evalue=4e-58,
Organism=Escherichia coli, GI226510982, Length=417, Percent_Identity=28.7769784172662, Blast_Score=161, Evalue=2e-40,
Organism=Escherichia coli, GI1788381, Length=465, Percent_Identity=27.741935483871, Blast_Score=160, Evalue=4e-40,
Organism=Escherichia coli, GI1790496, Length=259, Percent_Identity=32.8185328185328, Blast_Score=146, Evalue=4e-36,
Organism=Escherichia coli, GI87081845, Length=221, Percent_Identity=37.10407239819, Blast_Score=142, Evalue=1e-34,
Organism=Escherichia coli, GI1787055, Length=288, Percent_Identity=28.4722222222222, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI87081980, Length=252, Percent_Identity=33.7301587301587, Blast_Score=124, Evalue=3e-29,
Organism=Escherichia coli, GI1788502, Length=246, Percent_Identity=33.3333333333333, Blast_Score=124, Evalue=3e-29,
Organism=Escherichia coli, GI87081743, Length=240, Percent_Identity=30.4166666666667, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI1786507, Length=225, Percent_Identity=33.3333333333333, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1788849, Length=446, Percent_Identity=24.8878923766816, Blast_Score=112, Evalue=7e-26,
Organism=Escherichia coli, GI87082096, Length=196, Percent_Identity=31.1224489795918, Blast_Score=102, Evalue=9e-23,
Organism=Escherichia coli, GI87081977, Length=169, Percent_Identity=34.3195266272189, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1787816, Length=249, Percent_Identity=30.9236947791165, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786584, Length=172, Percent_Identity=35.4651162790698, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI87082007, Length=160, Percent_Identity=36.875, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1788956, Length=179, Percent_Identity=31.8435754189944, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI1789650, Length=425, Percent_Identity=21.8823529411765, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI87081881, Length=200, Percent_Identity=29.5, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI145693134, Length=168, Percent_Identity=32.1428571428571, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI1788085, Length=162, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=6e-12,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=30.2469135802469, Blast_Score=66, Evalue=9e-12,
Organism=Escherichia coli, GI1787802, Length=159, Percent_Identity=27.6729559748428, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI87081974, Length=160, Percent_Identity=28.125, Blast_Score=63, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 84752; Mature: 84752

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPKSICAGIATFLSVRTGNPELLKAQFAALSRLIPLMYFILVADAWVLAGTFIHRAPLW
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
LTLYASLLLTAICLSRLVVWWKKRNVALTVETAFAELRRANRVAAALTVVFPAWAFALFS
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGDALEQSHVAFFLVISILGTMFCLIHLRSAALIVAAVAGSAFVVFFASTGQPVFIGMAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEHHHH
NVVFVIGASVVVVLIQNRDFVRMVNASIAARSKEQAQNRLLRMIDDMPVAVMTVEPDTLK
HHHHHHHHHHEEEEECCCCEEHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEECCCEEE
INYVNETSKRLVRRIEHLLPIKADDLPGTCIDVFHRHPQHQRRILGDPANLPHNARISLG
EEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEEC
PEVIDLKVSAVTDTDGTYIGPMLTWALVTKEAESERRIFQMAHYDILTGLPNRITFHEEL
CEEEEEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEHHHHH
DKRLGTPGNRVGLLFVDLDGFKLVNDTRGHRIGDILLTQVASRLRATCNSPATVVGRLGG
HHHHCCCCCEEEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
DEFAVLVPHDNAEEAALLAARVVAFLSEPYDLDYDRSIQITASVGIALAPLHGEDGETLL
CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEEECCCCCCHHHH
SRADIALHVAKTAGKGEFRMFQPEMEARIQERMRLEARLQATLKSEEGLFVFYQSIIGID
HHCCEEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCC
SGTVTAREALVRWYHPERGWISPGEFVPVAEQSGLIDQLGGFVLNTACRDAARWTDGARV
CCCHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE
AVNISASQIGKGTLVPSILAALEASGLPPERLEIEVTETALLYDERDTTAELQQLRKLGV
EEEECHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCC
RVALDDFGTGYSSLAHLRAFPFDKIKIDGSFVRDAVDRPDCAAVVQVVASLGKRLGVTTV
EEEEHHCCCCHHHHHHHHCCCCCEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHH
AEGVETQAHLDRVREEGCTEVQGYLFGRLKPDERDAPLVEELNRRAREAATA
HHCCHHHHHHHHHHHCCCHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNPKSICAGIATFLSVRTGNPELLKAQFAALSRLIPLMYFILVADAWVLAGTFIHRAPLW
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
LTLYASLLLTAICLSRLVVWWKKRNVALTVETAFAELRRANRVAAALTVVFPAWAFALFS
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGDALEQSHVAFFLVISILGTMFCLIHLRSAALIVAAVAGSAFVVFFASTGQPVFIGMAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEHHHH
NVVFVIGASVVVVLIQNRDFVRMVNASIAARSKEQAQNRLLRMIDDMPVAVMTVEPDTLK
HHHHHHHHHHEEEEECCCCEEHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEECCCEEE
INYVNETSKRLVRRIEHLLPIKADDLPGTCIDVFHRHPQHQRRILGDPANLPHNARISLG
EEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEEC
PEVIDLKVSAVTDTDGTYIGPMLTWALVTKEAESERRIFQMAHYDILTGLPNRITFHEEL
CEEEEEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEHHHHH
DKRLGTPGNRVGLLFVDLDGFKLVNDTRGHRIGDILLTQVASRLRATCNSPATVVGRLGG
HHHHCCCCCEEEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
DEFAVLVPHDNAEEAALLAARVVAFLSEPYDLDYDRSIQITASVGIALAPLHGEDGETLL
CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEEECCCCCCHHHH
SRADIALHVAKTAGKGEFRMFQPEMEARIQERMRLEARLQATLKSEEGLFVFYQSIIGID
HHCCEEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCC
SGTVTAREALVRWYHPERGWISPGEFVPVAEQSGLIDQLGGFVLNTACRDAARWTDGARV
CCCHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE
AVNISASQIGKGTLVPSILAALEASGLPPERLEIEVTETALLYDERDTTAELQQLRKLGV
EEEECHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCC
RVALDDFGTGYSSLAHLRAFPFDKIKIDGSFVRDAVDRPDCAAVVQVVASLGKRLGVTTV
EEEEHHCCCCHHHHHHHHCCCCCEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHH
AEGVETQAHLDRVREEGCTEVQGYLFGRLKPDERDAPLVEELNRRAREAATA
HHCCHHHHHHHHHHHCCCHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]