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The map label for this gene is yggS [H]

Identifier: 162148167

GI number: 162148167

Start: 2458622

End: 2459368

Strand: Direct

Name: yggS [H]

Synonym: GDI_2384

Alternate gene names: 162148167

Gene position: 2458622-2459368 (Clockwise)

Preceding gene: 162148162

Following gene: 162148168

Centisome position: 62.34

GC content: 72.69

Gene sequence:

>747_bases
ATGACGACGCTGCCCGCCGCCCCCGTTCTTTCCCCCTCCGCCCTCGCCGCGATCCCTGCCGCGCTGGCAGGCATCCGGGC
GCGGATTGCCGCCGCCGCCCGGCGGGCGGGGCGCGCGCCGGACGCGGTCACGCTGGTCGCGGTATCGAAATTCCATCCCC
AGTCCAGCGTCGTGGCGGCCCTGGAAGCCGGACAGATGGTCTTCGGCGAGAACCGGGTGCAGGAAGCCGCCGGGAAATTT
CCGTCCCTGCGCGCCGACTGGCCCGCGCTGCGGCTGCATGTCATCGGCGGGTTGCAGACCAACAAGGCCCTGGACGCGGT
GCGGATCGCGGACATGATCGAAAGCCTGGATCGCCCGGCGCTGGCCGATGCCCTGGCGCGCGCGGCCGATCGCGCCGGCC
GCCTGCCGGACCTGCTGGTGCAGGTCAATACCGGCGACGAAGCCCAGAAATCCGGCGTGCCGCGCGCCCAGGCCGACGCC
TTCATCACCGATTGCCGCCGGCGGTTCGGCGACGCGGTACGCGGGCTGATGTGCATTCCCCCGGCGGACCGGGACCCGGC
GCCGCATTTCGCGTTCCTGGCGGAACTGGGCCGCGCGCACGGGCTGGAGGTGCTGTCGATGGGCATGTCGGCCGATTTCG
AGGCGGCGATCGCGGCCGGGGCGACGCATGTGCGCGTCGGCAGCGCCATTTTCGGCCAGCGGCCTGCCACAGCAACGCCC
GATCCAGACAGGGGGGCCGGGGAATAG

Upstream 100 bases:

>100_bases
GCGTGCTGATCGCACGCCCGCCCCCGGGCCGCCAGTCCCCCGCCGGGGAATTCTGCCCGCCGCCCTTGACCGCCGGGCCG
CGCGGCCCAACCGTAGCACC

Downstream 100 bases:

>100_bases
CTAGGTCCCGGCAAGTCACCTTGCCCCCCCCGGATCATGACGCTATGCCGATGAACAAGGCCGGCCAACCCGCCGCCCTC
TGATCTGACTGCGGAGACGT

Product: alanine racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MTTLPAAPVLSPSALAAIPAALAGIRARIAAAARRAGRAPDAVTLVAVSKFHPQSSVVAALEAGQMVFGENRVQEAAGKF
PSLRADWPALRLHVIGGLQTNKALDAVRIADMIESLDRPALADALARAADRAGRLPDLLVQVNTGDEAQKSGVPRAQADA
FITDCRRRFGDAVRGLMCIPPADRDPAPHFAFLAELGRAHGLEVLSMGMSADFEAAIAAGATHVRVGSAIFGQRPATATP
DPDRGAGE

Sequences:

>Translated_248_residues
MTTLPAAPVLSPSALAAIPAALAGIRARIAAAARRAGRAPDAVTLVAVSKFHPQSSVVAALEAGQMVFGENRVQEAAGKF
PSLRADWPALRLHVIGGLQTNKALDAVRIADMIESLDRPALADALARAADRAGRLPDLLVQVNTGDEAQKSGVPRAQADA
FITDCRRRFGDAVRGLMCIPPADRDPAPHFAFLAELGRAHGLEVLSMGMSADFEAAIAAGATHVRVGSAIFGQRPATATP
DPDRGAGE
>Mature_247_residues
TTLPAAPVLSPSALAAIPAALAGIRARIAAAARRAGRAPDAVTLVAVSKFHPQSSVVAALEAGQMVFGENRVQEAAGKFP
SLRADWPALRLHVIGGLQTNKALDAVRIADMIESLDRPALADALARAADRAGRLPDLLVQVNTGDEAQKSGVPRAQADAF
ITDCRRRFGDAVRGLMCIPPADRDPAPHFAFLAELGRAHGLEVLSMGMSADFEAAIAAGATHVRVGSAIFGQRPATATPD
PDRGAGE

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=260, Percent_Identity=35.7692307692308, Blast_Score=119, Evalue=2e-27,
Organism=Escherichia coli, GI1789321, Length=228, Percent_Identity=39.4736842105263, Blast_Score=134, Evalue=6e-33,
Organism=Caenorhabditis elegans, GI17533025, Length=246, Percent_Identity=32.1138211382114, Blast_Score=78, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6319435, Length=241, Percent_Identity=33.195020746888, Blast_Score=99, Evalue=5e-22,
Organism=Drosophila melanogaster, GI45550861, Length=213, Percent_Identity=38.0281690140845, Blast_Score=111, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25701; Mature: 25569

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLPAAPVLSPSALAAIPAALAGIRARIAAAARRAGRAPDAVTLVAVSKFHPQSSVVAA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHCCCHHHHHHH
LEAGQMVFGENRVQEAAGKFPSLRADWPALRLHVIGGLQTNKALDAVRIADMIESLDRPA
HHHCCHHHCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHH
LADALARAADRAGRLPDLLVQVNTGDEAQKSGVPRAQADAFITDCRRRFGDAVRGLMCIP
HHHHHHHHHHHCCCCCEEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEECC
PADRDPAPHFAFLAELGRAHGLEVLSMGMSADFEAAIAAGATHVRVGSAIFGQRPATATP
CCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHCCCHHEEECHHHHCCCCCCCCC
DPDRGAGE
CCCCCCCC
>Mature Secondary Structure 
TTLPAAPVLSPSALAAIPAALAGIRARIAAAARRAGRAPDAVTLVAVSKFHPQSSVVAA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHCCCHHHHHHH
LEAGQMVFGENRVQEAAGKFPSLRADWPALRLHVIGGLQTNKALDAVRIADMIESLDRPA
HHHCCHHHCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHH
LADALARAADRAGRLPDLLVQVNTGDEAQKSGVPRAQADAFITDCRRRFGDAVRGLMCIP
HHHHHHHHHHHCCCCCEEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEECC
PADRDPAPHFAFLAELGRAHGLEVLSMGMSADFEAAIAAGATHVRVGSAIFGQRPATATP
CCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHCCCHHEEECHHHHCCCCCCCCC
DPDRGAGE
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]