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The map label for this gene is rarA [H]

Identifier: 162148061

GI number: 162148061

Start: 2338687

End: 2340108

Strand: Reverse

Name: rarA [H]

Synonym: GDI_2278

Alternate gene names: 162148061

Gene position: 2340108-2338687 (Counterclockwise)

Preceding gene: 162148062

Following gene: 162148060

Centisome position: 59.33

GC content: 70.75

Gene sequence:

>1422_bases
ATGGCGGGCAGGCGGGATGACCACGGTGACGGAGATCTGTTCGGCGGTCCGGCGTCCCCCGTGCAGGGCACGTCGGGGCA
GGGGGCGTCCGGTTCCGGCGGGCGCCGGGGGCGGGCCGCGCCGCCGCGCACGCAGCCCCTGGCCGACCGGCTGCGCCCCG
AATCGCTGGACGATGTGGTGGGGCAGGACCACCTGCTGGGCCCCGACGGCGCGCTGCGGCGCATGCTCGATCGGGGATCG
CTGGCCAGCCTGATCCTGTGGGGCGGCCCCGGGGTCGGCAAGACGACCATCGCCCGCCTGCTGGCCGACGCGGCAGGGCT
GCGTTTCGTGCAGCTTTCGGCGGTGTTTTCGGGCGTGGCCGACCTGAAGCGCGCGTTCGACGATGCCCGGCGCCTGGGCG
AAGCCGGGCAGGGGACGCTGCTGTTCGTGGACGAAATCCACCGCTTCAACCGCGCCCAGCAGGATGGTTTCCTGCCGGTG
GTCGAGGACGGGACGGTGGTCCTGGTGGGTGCCACCACCGAAAACCCATCCTTCGCGCTGAACGGCGCGCTGCTGTCGCG
CTGCCAGGTGATGGTGCTGCGCCGGCTGGACGATCCGGCGCTGGAACGCCTGCTCTGCCGGGCGGAGGAGGCAACCGGTC
GCGCGCTGCCCCTGACGCCGGACGGGCGCGCCACCCTGCGTGCCATGGCCGATGGTGACGGGCGCTACCTGCTGAACATG
GTCGAACAGGTTCTGGCGGTTCGCACGGACCAGCCGATGGACGCGCACGGCCTGTCCGGCCTGCTGGCCCGGCGCGCGGT
GCTGTACGACAAGGACCGCGAGGAGCATTACAACCTGATCTCGGCGCTGCATAAATCCCTGCGTGGCTCCGATACCGATG
CGGCCCTGTACTGGTTCGCCCGCATGCTCGAAGGCGGCGAGGACCCGCGCTACATCGCCCGGCGGCTGACCCGCTTCGCG
GCCGAGGACGTGGGCATGGCCGATCCGCAGGCCCTGCCGCTGGCTATCGCGGCGTGGGAGACGTACGAACGTCTGGGCTC
GCCCGAGGGGGAACTGGCCCTGGCGCAACTGGTGGTCCATCTGGGCACCGCACCGAAGTCGAATGCCGTCTACACGGCGT
ACAAGGCCGCGCGGCGCCTGGCGAAATCGACCGGCAGCCTGATGCCGCCGGCCCATATCCTGAACGCGCCGACCAACCTG
ATGAAGGATTTGGGATACGGTCGCGGCTACGATTCCGAATACGCGGATGTCTACGCGGATGCCGATCCGGGGGCGGGACA
GCGGACCGCCGCGCGCGATCACTTCCCCGACGGGATGGGCCCGCAGCAGCTCTATCGGCCGTTCGATCGCGGGTTCGAGC
GCGAAATCGGGAAACGTCTGGAATACTGGGCGCGGCTGCGCGCGGGCGGCAAGGGCCAATAG

Upstream 100 bases:

>100_bases
CATGGATCACGCGCTGCCCTGGTGAGGCATTTCCACTCGGCGCCATGCCCGTGGTATCCGGCGGGCCGGGGCACTCTGCG
ACAGGGATGGACGCGACGGC

Downstream 100 bases:

>100_bases
CGCGCCGTCTTGCCCGGTTTCTTCTTACGCGTGCGACTTGCTGCCGGTTACCAGCACGGTTTTTTCCATGTCGATCATCC
GCGCCTCGGCCTTGACCTCG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MAGRRDDHGDGDLFGGPASPVQGTSGQGASGSGGRRGRAAPPRTQPLADRLRPESLDDVVGQDHLLGPDGALRRMLDRGS
LASLILWGGPGVGKTTIARLLADAAGLRFVQLSAVFSGVADLKRAFDDARRLGEAGQGTLLFVDEIHRFNRAQQDGFLPV
VEDGTVVLVGATTENPSFALNGALLSRCQVMVLRRLDDPALERLLCRAEEATGRALPLTPDGRATLRAMADGDGRYLLNM
VEQVLAVRTDQPMDAHGLSGLLARRAVLYDKDREEHYNLISALHKSLRGSDTDAALYWFARMLEGGEDPRYIARRLTRFA
AEDVGMADPQALPLAIAAWETYERLGSPEGELALAQLVVHLGTAPKSNAVYTAYKAARRLAKSTGSLMPPAHILNAPTNL
MKDLGYGRGYDSEYADVYADADPGAGQRTAARDHFPDGMGPQQLYRPFDRGFEREIGKRLEYWARLRAGGKGQ

Sequences:

>Translated_473_residues
MAGRRDDHGDGDLFGGPASPVQGTSGQGASGSGGRRGRAAPPRTQPLADRLRPESLDDVVGQDHLLGPDGALRRMLDRGS
LASLILWGGPGVGKTTIARLLADAAGLRFVQLSAVFSGVADLKRAFDDARRLGEAGQGTLLFVDEIHRFNRAQQDGFLPV
VEDGTVVLVGATTENPSFALNGALLSRCQVMVLRRLDDPALERLLCRAEEATGRALPLTPDGRATLRAMADGDGRYLLNM
VEQVLAVRTDQPMDAHGLSGLLARRAVLYDKDREEHYNLISALHKSLRGSDTDAALYWFARMLEGGEDPRYIARRLTRFA
AEDVGMADPQALPLAIAAWETYERLGSPEGELALAQLVVHLGTAPKSNAVYTAYKAARRLAKSTGSLMPPAHILNAPTNL
MKDLGYGRGYDSEYADVYADADPGAGQRTAARDHFPDGMGPQQLYRPFDRGFEREIGKRLEYWARLRAGGKGQ
>Mature_472_residues
AGRRDDHGDGDLFGGPASPVQGTSGQGASGSGGRRGRAAPPRTQPLADRLRPESLDDVVGQDHLLGPDGALRRMLDRGSL
ASLILWGGPGVGKTTIARLLADAAGLRFVQLSAVFSGVADLKRAFDDARRLGEAGQGTLLFVDEIHRFNRAQQDGFLPVV
EDGTVVLVGATTENPSFALNGALLSRCQVMVLRRLDDPALERLLCRAEEATGRALPLTPDGRATLRAMADGDGRYLLNMV
EQVLAVRTDQPMDAHGLSGLLARRAVLYDKDREEHYNLISALHKSLRGSDTDAALYWFARMLEGGEDPRYIARRLTRFAA
EDVGMADPQALPLAIAAWETYERLGSPEGELALAQLVVHLGTAPKSNAVYTAYKAARRLAKSTGSLMPPAHILNAPTNLM
KDLGYGRGYDSEYADVYADADPGAGQRTAARDHFPDGMGPQQLYRPFDRGFEREIGKRLEYWARLRAGGKGQ

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=421, Percent_Identity=44.6555819477435, Blast_Score=330, Evalue=1e-90,
Organism=Homo sapiens, GI18426904, Length=421, Percent_Identity=40.3800475059382, Blast_Score=278, Evalue=7e-75,
Organism=Escherichia coli, GI1787119, Length=430, Percent_Identity=45.1162790697674, Blast_Score=350, Evalue=9e-98,
Organism=Saccharomyces cerevisiae, GI6324111, Length=429, Percent_Identity=40.5594405594406, Blast_Score=298, Evalue=2e-81,
Organism=Saccharomyces cerevisiae, GI6324039, Length=216, Percent_Identity=28.2407407407407, Blast_Score=77, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 51107; Mature: 50976

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGRRDDHGDGDLFGGPASPVQGTSGQGASGSGGRRGRAAPPRTQPLADRLRPESLDDVV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHH
GQDHLLGPDGALRRMLDRGSLASLILWGGPGVGKTTIARLLADAAGLRFVQLSAVFSGVA
CCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
DLKRAFDDARRLGEAGQGTLLFVDEIHRFNRAQQDGFLPVVEDGTVVLVGATTENPSFAL
HHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCEEECCCCEEEEEECCCCCCEEE
NGALLSRCQVMVLRRLDDPALERLLCRAEEATGRALPLTPDGRATLRAMADGDGRYLLNM
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEECCCCCHHHHHH
VEQVLAVRTDQPMDAHGLSGLLARRAVLYDKDREEHYNLISALHKSLRGSDTDAALYWFA
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RMLEGGEDPRYIARRLTRFAAEDVGMADPQALPLAIAAWETYERLGSPEGELALAQLVVH
HHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
LGTAPKSNAVYTAYKAARRLAKSTGSLMPPAHILNAPTNLMKDLGYGRGYDSEYADVYAD
HCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHCCCCCCCCCCHHHEEEC
ADPGAGQRTAARDHFPDGMGPQQLYRPFDRGFEREIGKRLEYWARLRAGGKGQ
CCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AGRRDDHGDGDLFGGPASPVQGTSGQGASGSGGRRGRAAPPRTQPLADRLRPESLDDVV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHH
GQDHLLGPDGALRRMLDRGSLASLILWGGPGVGKTTIARLLADAAGLRFVQLSAVFSGVA
CCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
DLKRAFDDARRLGEAGQGTLLFVDEIHRFNRAQQDGFLPVVEDGTVVLVGATTENPSFAL
HHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCEEECCCCEEEEEECCCCCCEEE
NGALLSRCQVMVLRRLDDPALERLLCRAEEATGRALPLTPDGRATLRAMADGDGRYLLNM
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEECCCCCHHHHHH
VEQVLAVRTDQPMDAHGLSGLLARRAVLYDKDREEHYNLISALHKSLRGSDTDAALYWFA
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RMLEGGEDPRYIARRLTRFAAEDVGMADPQALPLAIAAWETYERLGSPEGELALAQLVVH
HHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
LGTAPKSNAVYTAYKAARRLAKSTGSLMPPAHILNAPTNLMKDLGYGRGYDSEYADVYAD
HCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHCCCCCCCCCCHHHEEEC
ADPGAGQRTAARDHFPDGMGPQQLYRPFDRGFEREIGKRLEYWARLRAGGKGQ
CCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]