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The map label for this gene is rpoZ

Identifier: 162147941

GI number: 162147941

Start: 2210263

End: 2210661

Strand: Reverse

Name: rpoZ

Synonym: GDI_2157

Alternate gene names: 162147941

Gene position: 2210661-2210263 (Counterclockwise)

Preceding gene: 162147942

Following gene: 162147940

Centisome position: 56.05

GC content: 65.91

Gene sequence:

>399_bases
ATGGCTCGCGTCACCGTCGAAGATTGCGTTGAACGGGTTCCCAACCGATTCGAACTGGTCCTGCTCGCCGCACAGCGCGC
GCGCGGCCTGTCGCGCGGGGAAGAATTGACGGTCGACCGCGACAACGACAAGAACCCGGTCGTGGCGCTGCGCGAAATCG
CCGACCAGACGATCGTGCTGGAGCAGATTCGCAGCGATCTCGTCCGTTCGCTGGCCCGCGCGCCCGAGCCCGAGCCCGCC
GACGAGGAGGTCATGGACCTGATCCCGACCGAGCAGAACATCTTCGGACTGCAGGATGTCTCGGCCGAGGAAGAAGCATC
CCACGGTACTGCCGGCATGTCGGCCGAAGAACTGGAAGCCGCGATCGAGGCCGAACTGGGCGGCCGCGCGCGTCGATAA

Upstream 100 bases:

>100_bases
GCCGGCTGGAGGCGGACTGACCGGCCTGCCTTGCACTTTGGGGGCGCGGCGACTACATATGGTTCTTTGCAACTGACACT
TACATCCGGAGGCCTGCCTC

Downstream 100 bases:

>100_bases
ACCCATGGGGAAGAATGCGGCGGACCCTGTCGGCACGTTGCATGTCCCCGCCCTCGAACTGGGGGCGTCCCTTCCGGCTG
GGGGCACGGGATCGGGCCGG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MARVTVEDCVERVPNRFELVLLAAQRARGLSRGEELTVDRDNDKNPVVALREIADQTIVLEQIRSDLVRSLARAPEPEPA
DEEVMDLIPTEQNIFGLQDVSAEEEASHGTAGMSAEELEAAIEAELGGRARR

Sequences:

>Translated_132_residues
MARVTVEDCVERVPNRFELVLLAAQRARGLSRGEELTVDRDNDKNPVVALREIADQTIVLEQIRSDLVRSLARAPEPEPA
DEEVMDLIPTEQNIFGLQDVSAEEEASHGTAGMSAEELEAAIEAELGGRARR
>Mature_131_residues
ARVTVEDCVERVPNRFELVLLAAQRARGLSRGEELTVDRDNDKNPVVALREIADQTIVLEQIRSDLVRSLARAPEPEPAD
EEVMDLIPTEQNIFGLQDVSAEEEASHGTAGMSAEELEAAIEAELGGRARR

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_GLUDA (A9HKY5)

Other databases:

- EMBL:   AM889285
- EMBL:   CP001189
- RefSeq:   YP_001602402.1
- RefSeq:   YP_002274788.1
- GeneID:   5792516
- GeneID:   6973771
- GenomeReviews:   AM889285_GR
- GenomeReviews:   CP001189_GR
- KEGG:   gdj:Gdia_0377
- HOGENOM:   HBG742204
- OMA:   PTEQNIF
- ProtClustDB:   PRK00392
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 14534; Mature: 14403

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCVERVPNRFELVLLAAQRARGLSRGEELTVDRDNDKNPVVALREIADQTIVL
CCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHH
EQIRSDLVRSLARAPEPEPADEEVMDLIPTEQNIFGLQDVSAEEEASHGTAGMSAEELEA
HHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHH
AIEAELGGRARR
HHHHHCCCCCCC
>Mature Secondary Structure 
ARVTVEDCVERVPNRFELVLLAAQRARGLSRGEELTVDRDNDKNPVVALREIADQTIVL
CCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHH
EQIRSDLVRSLARAPEPEPADEEVMDLIPTEQNIFGLQDVSAEEEASHGTAGMSAEELEA
HHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHH
AIEAELGGRARR
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA