Click here to switch to the map view.

The map label for this gene is dapD [H]

Identifier: 162147916

GI number: 162147916

Start: 2186381

End: 2187283

Strand: Reverse

Name: dapD [H]

Synonym: GDI_2132

Alternate gene names: 162147916

Gene position: 2187283-2186381 (Counterclockwise)

Preceding gene: 162147917

Following gene: 162147915

Centisome position: 55.46

GC content: 68.66

Gene sequence:

>903_bases
ATGAAGACGGAATGCGATGGGCCGCCATGGCCATCGCCGAGACAGGATTGCAGGACCATGAACGACGAGCACGCCCTCCG
GACCCATATCGAGGCAGCATGGGAGCGGCGCGACACGCTGTCCTCTGCCACGAAAGGCGCGGACCGCGAGGCCGTCGAGC
ATGCGCTGGCCGGGCTGGATTCGGGCGCGCTGCGCGTTGCCACGCCCACCGATGCCGGGTGGGTCGTCAATGAGTGGCTG
AAGAAGGCGGTGCTGCTGTCCTTCCGCCTGAACGACAGCCACGTGATGCCTGCCGCACCGGCGCCGTTCTTCGACAAGGT
GCCGCTGAAGTTCCAGGGTTGGGACGAGGCACAGTTCGGCCAGGCGGCCTTCCGCGCCGTTCCGGGCGCCATCGTCCGGC
GGTCGGCCTATATCGCGCCCGGCGTGGTGCTGATGCCCAGCTTCGTCAATGCCGGCGCCCGCGTCGAAAGCGGCACGATG
GTCGATACCTGGGTCACGATCGGAAGCTGCGCGCAGATCGGCCGCAACTGCCATATCAGCGGCGGCGTCGGCATCGGCGG
CGTGCTGGAACCGTTGCAGGCCGCGCCGGTCATCATCGAGGATGACTGCTTCATCGGCGCGCGCTCGGAAGTCGCCGAGG
GCGTGATCGTCGAGCGCGGCAGCGTGCTGTCGATGGGCGTGTTCCTGAGCGCGTCGACCAAGATCGTCGACCGCACGACG
GGCGAGGTCTTCGTCGGCCGCGTGCCGGCCTATTCGGTCGTGGTGCCGGGCACGCTGCCGCCGCGCACGCCGCATGCCGC
CGACGGCACGCCGCTGCCCGCGCTGGCCTGCGCCGTGATCGTGAAGCGCGTCGACGAACGCACCCGCTCCAAGACCTCGA
TCAACGAATTGCTGCGCGATTGA

Upstream 100 bases:

>100_bases
CGGTCCCGGAACGCTGATCCGCGGCGAATAGGGACCGCGCGACGCCACGGGGGCGAGATGCGTTGACAGGCCGGGGCCTT
CCTTCGCATGGTCCCGCGAC

Downstream 100 bases:

>100_bases
CTGGTGCCCTGACCCCGGCATCCACCCCCGCGCTCACCCTGGCGCGGGACCTGATCCGCGCGCCGTCGGTCACGCCGGAC
GATGGCGGCGCGATCGGGGT

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MKTECDGPPWPSPRQDCRTMNDEHALRTHIEAAWERRDTLSSATKGADREAVEHALAGLDSGALRVATPTDAGWVVNEWL
KKAVLLSFRLNDSHVMPAAPAPFFDKVPLKFQGWDEAQFGQAAFRAVPGAIVRRSAYIAPGVVLMPSFVNAGARVESGTM
VDTWVTIGSCAQIGRNCHISGGVGIGGVLEPLQAAPVIIEDDCFIGARSEVAEGVIVERGSVLSMGVFLSASTKIVDRTT
GEVFVGRVPAYSVVVPGTLPPRTPHAADGTPLPALACAVIVKRVDERTRSKTSINELLRD

Sequences:

>Translated_300_residues
MKTECDGPPWPSPRQDCRTMNDEHALRTHIEAAWERRDTLSSATKGADREAVEHALAGLDSGALRVATPTDAGWVVNEWL
KKAVLLSFRLNDSHVMPAAPAPFFDKVPLKFQGWDEAQFGQAAFRAVPGAIVRRSAYIAPGVVLMPSFVNAGARVESGTM
VDTWVTIGSCAQIGRNCHISGGVGIGGVLEPLQAAPVIIEDDCFIGARSEVAEGVIVERGSVLSMGVFLSASTKIVDRTT
GEVFVGRVPAYSVVVPGTLPPRTPHAADGTPLPALACAVIVKRVDERTRSKTSINELLRD
>Mature_300_residues
MKTECDGPPWPSPRQDCRTMNDEHALRTHIEAAWERRDTLSSATKGADREAVEHALAGLDSGALRVATPTDAGWVVNEWL
KKAVLLSFRLNDSHVMPAAPAPFFDKVPLKFQGWDEAQFGQAAFRAVPGAIVRRSAYIAPGVVLMPSFVNAGARVESGTM
VDTWVTIGSCAQIGRNCHISGGVGIGGVLEPLQAAPVIIEDDCFIGARSEVAEGVIVERGSVLSMGVFLSASTKIVDRTT
GEVFVGRVPAYSVVVPGTLPPRTPHAADGTPLPALACAVIVKRVDERTRSKTSINELLRD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=277, Percent_Identity=61.3718411552347, Blast_Score=313, Evalue=9e-87,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 32032; Mature: 32032

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTECDGPPWPSPRQDCRTMNDEHALRTHIEAAWERRDTLSSATKGADREAVEHALAGLD
CCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
SGALRVATPTDAGWVVNEWLKKAVLLSFRLNDSHVMPAAPAPFFDKVPLKFQGWDEAQFG
CCCEEEECCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCEECCCCCHHHH
QAAFRAVPGAIVRRSAYIAPGVVLMPSFVNAGARVESGTMVDTWVTIGSCAQIGRNCHIS
HHHHHHCCHHHHHHHHHHCCCCEEHHHHHCCCCEECCCCEEEHHHHHHHHHHHCCCEEEC
GGVGIGGVLEPLQAAPVIIEDDCFIGARSEVAEGVIVERGSVLSMGVFLSASTKIVDRTT
CCCCCCHHHHHHHHCCEEEECCCCCCCHHHHHCCEEEECCCEEEEEEEEECCCEEEECCC
GEVFVGRVPAYSVVVPGTLPPRTPHAADGTPLPALACAVIVKRVDERTRSKTSINELLRD
CCEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKTECDGPPWPSPRQDCRTMNDEHALRTHIEAAWERRDTLSSATKGADREAVEHALAGLD
CCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
SGALRVATPTDAGWVVNEWLKKAVLLSFRLNDSHVMPAAPAPFFDKVPLKFQGWDEAQFG
CCCEEEECCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCEECCCCCHHHH
QAAFRAVPGAIVRRSAYIAPGVVLMPSFVNAGARVESGTMVDTWVTIGSCAQIGRNCHIS
HHHHHHCCHHHHHHHHHHCCCCEEHHHHHCCCCEECCCCEEEHHHHHHHHHHHCCCEEEC
GGVGIGGVLEPLQAAPVIIEDDCFIGARSEVAEGVIVERGSVLSMGVFLSASTKIVDRTT
CCCCCCHHHHHHHHCCEEEECCCCCCCHHHHHCCEEEECCCEEEEEEEEECCCEEEECCC
GEVFVGRVPAYSVVVPGTLPPRTPHAADGTPLPALACAVIVKRVDERTRSKTSINELLRD
CCEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA