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The map label for this gene is lysK [H]

Identifier: 162147830

GI number: 162147830

Start: 2091056

End: 2092678

Strand: Reverse

Name: lysK [H]

Synonym: GDI_2046

Alternate gene names: 162147830

Gene position: 2092678-2091056 (Counterclockwise)

Preceding gene: 162147832

Following gene: 162147829

Centisome position: 53.06

GC content: 68.27

Gene sequence:

>1623_bases
ATGTCCGAACAGAACCGTACCGACCCCGTTTCCCTGCCCAAGGCCTGGCCGTTCGAGGAGGCCGCCAAACTGGCGGCCCA
CGTCGAAGGGAAGGCCGGCCCGGCGGATGCTCCCGCCCTGCTGGAAACCGGCTATGGGCCCTCCGGCCTGCCGCATATCG
GCACGTTCGGCGAGGTCGCGCGCACATCGTGGGTGTGTCAGGCCTATACCCGGCTGACGGGGCGGCCGACGCGGCTGCTG
GCCTTTTCCGACGACATGGACGCGCTGCGCAAGGTGCCGGACAACGTGCCCAACGGCGACATGCTGCGCCAGCACCTGGG
CAAGCCGCTGTCGCGCATCCCCGACCCGTTCGGCACCCACGAATCGTTCGCCGCCCACAACAATGCCCGGCTGCGTTCGT
TCCTGGACGGATTCGGCTTCACGTACGAATTCGCGTCCTCGACCGATTACTACACCGGCGGGCTGTTCGATGCCGCGCTG
CGCCGGGTGCTGGAAGTGCACGACGAGATCGTCGCGGTCATCGCCCCGACCCTGGGGCCGGACCGCCGCGCCACCTATTC
CCCGGTCCTGCCGATCCATCCGCGCACCGGCATGGTGATGCAGGTGCGCATGGATGCGATCGACCCGGCGGCCGGCACCG
TCCGCTGGACCGACGACGACGGCACCGTCTTCGAGACCCCGGTGACCGGCGGCCATGCCAAGATGCAGTGGAAGGCCGAC
TGGGCCATGCGCTGGTTCGCGCTGGGCGTGGATTACGAAATGTCGGGCAAGGACCTGATCGACAGCGTCAAGCTGTCGGG
CAAGATCTGCCGCATCCTGGGTGGCCAGCCGCCCGCCGGCCTGACCTACGAACTCTTCCTGGACGAAAACGGCCAGAAGA
TTTCCAAGTCCAAGGGCAACGGCATTTCGGTCGAGGAATGGCTGCGCTACGCCCCGCCCGAAAGCCTGGGCCAGTATATG
TTCAATGCCCCGCAGAGGGCGAAGCGCCTGTTCTTCGACGTCATCCCCAAGGCGGCCGACGAGTACCTGGCCAATGTCGC
GCGTGCGCAGGCGCTGCCGGATAACGATCCCGCGCTGCTGTCCAACCCGGCCTGGTTCATCCATGGCGGCCCGATCGGCG
CGGATGCCGGCAGCCCGCTGACATTCGGCATGCTGCTGAACCTGGCCAGCGTCGCGAATGCCGAAACCCCGGACGTGCTG
TGGAAATTCATCCGCCGCTATGACGCCGCCGCCTCGCCCGAGACCTGCCAGCTGCTGGCGCGGCTGGTGGACCACGCGAT
CGTCTATTACGCCGATTTCGTCCGTCCCGCGAAGACCTATCGCCAGCCCGACGCGCGCGAGCGCGCGGCCCTGTCCGACC
TGGCGGACAGCCTGCGCGGGCTGGCGGACGGGCCGTCCGACCCCGATACGCTGCAGAACCTGGTGTTCGAGATCGGCAAG
CGCCACGGGTTCGAGCCGCTGCGCACCTGGTTCGGCTGCCTGTACGAGGTCCTGCTGGGCCAGACCGAGGGGCCGCGCTT
CGGCATCTTCATCGGCCTGTACGGCGTGGCGGAAACGGTGGCGCTGATCGAGGCCGCGCTGCTTCGTCCCTCGGTCGAGG
CCCCGGCCGGCGGTGCCGGCTGA

Upstream 100 bases:

>100_bases
TGTCGCCCACCCAGCGGCCAATGCGCGATTATTCCATGGCGCCGATCGTGTATGGTGTGGATTGACCCGTTCCGCTCCAG
TTCATAGCTTTTGGCCCATC

Downstream 100 bases:

>100_bases
GAGCCGCGACATCCCTGTCATGACGTTTCGCAGCCCGTCATGTTCCTGAATCGACAAGACATGCAGGGCGCGCCGCCGCC
ATCGCCGCCGCCCGGCTGGC

Product: lysyl-tRNA synthetase

Products: NA

Alternate protein names: Lysine--tRNA ligase; LysRS [H]

Number of amino acids: Translated: 540; Mature: 539

Protein sequence:

>540_residues
MSEQNRTDPVSLPKAWPFEEAAKLAAHVEGKAGPADAPALLETGYGPSGLPHIGTFGEVARTSWVCQAYTRLTGRPTRLL
AFSDDMDALRKVPDNVPNGDMLRQHLGKPLSRIPDPFGTHESFAAHNNARLRSFLDGFGFTYEFASSTDYYTGGLFDAAL
RRVLEVHDEIVAVIAPTLGPDRRATYSPVLPIHPRTGMVMQVRMDAIDPAAGTVRWTDDDGTVFETPVTGGHAKMQWKAD
WAMRWFALGVDYEMSGKDLIDSVKLSGKICRILGGQPPAGLTYELFLDENGQKISKSKGNGISVEEWLRYAPPESLGQYM
FNAPQRAKRLFFDVIPKAADEYLANVARAQALPDNDPALLSNPAWFIHGGPIGADAGSPLTFGMLLNLASVANAETPDVL
WKFIRRYDAAASPETCQLLARLVDHAIVYYADFVRPAKTYRQPDARERAALSDLADSLRGLADGPSDPDTLQNLVFEIGK
RHGFEPLRTWFGCLYEVLLGQTEGPRFGIFIGLYGVAETVALIEAALLRPSVEAPAGGAG

Sequences:

>Translated_540_residues
MSEQNRTDPVSLPKAWPFEEAAKLAAHVEGKAGPADAPALLETGYGPSGLPHIGTFGEVARTSWVCQAYTRLTGRPTRLL
AFSDDMDALRKVPDNVPNGDMLRQHLGKPLSRIPDPFGTHESFAAHNNARLRSFLDGFGFTYEFASSTDYYTGGLFDAAL
RRVLEVHDEIVAVIAPTLGPDRRATYSPVLPIHPRTGMVMQVRMDAIDPAAGTVRWTDDDGTVFETPVTGGHAKMQWKAD
WAMRWFALGVDYEMSGKDLIDSVKLSGKICRILGGQPPAGLTYELFLDENGQKISKSKGNGISVEEWLRYAPPESLGQYM
FNAPQRAKRLFFDVIPKAADEYLANVARAQALPDNDPALLSNPAWFIHGGPIGADAGSPLTFGMLLNLASVANAETPDVL
WKFIRRYDAAASPETCQLLARLVDHAIVYYADFVRPAKTYRQPDARERAALSDLADSLRGLADGPSDPDTLQNLVFEIGK
RHGFEPLRTWFGCLYEVLLGQTEGPRFGIFIGLYGVAETVALIEAALLRPSVEAPAGGAG
>Mature_539_residues
SEQNRTDPVSLPKAWPFEEAAKLAAHVEGKAGPADAPALLETGYGPSGLPHIGTFGEVARTSWVCQAYTRLTGRPTRLLA
FSDDMDALRKVPDNVPNGDMLRQHLGKPLSRIPDPFGTHESFAAHNNARLRSFLDGFGFTYEFASSTDYYTGGLFDAALR
RVLEVHDEIVAVIAPTLGPDRRATYSPVLPIHPRTGMVMQVRMDAIDPAAGTVRWTDDDGTVFETPVTGGHAKMQWKADW
AMRWFALGVDYEMSGKDLIDSVKLSGKICRILGGQPPAGLTYELFLDENGQKISKSKGNGISVEEWLRYAPPESLGQYMF
NAPQRAKRLFFDVIPKAADEYLANVARAQALPDNDPALLSNPAWFIHGGPIGADAGSPLTFGMLLNLASVANAETPDVLW
KFIRRYDAAASPETCQLLARLVDHAIVYYADFVRPAKTYRQPDARERAALSDLADSLRGLADGPSDPDTLQNLVFEIGKR
HGFEPLRTWFGCLYEVLLGQTEGPRFGIFIGLYGVAETVALIEAALLRPSVEAPAGGAG

Specific function: Unknown

COG id: COG1384

COG function: function code J; Lysyl-tRNA synthetase (class I)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008925
- InterPro:   IPR020751
- InterPro:   IPR001412
- InterPro:   IPR002904
- InterPro:   IPR020754
- InterPro:   IPR020756
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01921 tRNA-synt_1f [H]

EC number: =6.1.1.6 [H]

Molecular weight: Translated: 58904; Mature: 58773

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQNRTDPVSLPKAWPFEEAAKLAAHVEGKAGPADAPALLETGYGPSGLPHIGTFGEVA
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHH
RTSWVCQAYTRLTGRPTRLLAFSDDMDALRKVPDNVPNGDMLRQHLGKPLSRIPDPFGTH
HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCCCHHHHHHHHCCHHHHCCCCCCCC
ESFAAHNNARLRSFLDGFGFTYEFASSTDYYTGGLFDAALRRVLEVHDEIVAVIAPTLGP
HHHHHCCHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
DRRATYSPVLPIHPRTGMVMQVRMDAIDPAAGTVRWTDDDGTVFETPVTGGHAKMQWKAD
CCCCCCCCEEECCCCCCCEEEEEECCCCCCCCEEEEECCCCCEEECCCCCCCEEEEECHH
WAMRWFALGVDYEMSGKDLIDSVKLSGKICRILGGQPPAGLTYELFLDENGQKISKSKGN
HHEEHHHCCCCCCCCCHHHHHHHHHCCHHHHEECCCCCCCCEEEEEECCCCCCHHCCCCC
GISVEEWLRYAPPESLGQYMFNAPQRAKRLFFDVIPKAADEYLANVARAQALPDNDPALL
CCCHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
SNPAWFIHGGPIGADAGSPLTFGMLLNLASVANAETPDVLWKFIRRYDAAASPETCQLLA
CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
RLVDHAIVYYADFVRPAKTYRQPDARERAALSDLADSLRGLADGPSDPDTLQNLVFEIGK
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
RHGFEPLRTWFGCLYEVLLGQTEGPRFGIFIGLYGVAETVALIEAALLRPSVEAPAGGAG
HCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SEQNRTDPVSLPKAWPFEEAAKLAAHVEGKAGPADAPALLETGYGPSGLPHIGTFGEVA
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHH
RTSWVCQAYTRLTGRPTRLLAFSDDMDALRKVPDNVPNGDMLRQHLGKPLSRIPDPFGTH
HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCCCHHHHHHHHCCHHHHCCCCCCCC
ESFAAHNNARLRSFLDGFGFTYEFASSTDYYTGGLFDAALRRVLEVHDEIVAVIAPTLGP
HHHHHCCHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
DRRATYSPVLPIHPRTGMVMQVRMDAIDPAAGTVRWTDDDGTVFETPVTGGHAKMQWKAD
CCCCCCCCEEECCCCCCCEEEEEECCCCCCCCEEEEECCCCCEEECCCCCCCEEEEECHH
WAMRWFALGVDYEMSGKDLIDSVKLSGKICRILGGQPPAGLTYELFLDENGQKISKSKGN
HHEEHHHCCCCCCCCCHHHHHHHHHCCHHHHEECCCCCCCCEEEEEECCCCCCHHCCCCC
GISVEEWLRYAPPESLGQYMFNAPQRAKRLFFDVIPKAADEYLANVARAQALPDNDPALL
CCCHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
SNPAWFIHGGPIGADAGSPLTFGMLLNLASVANAETPDVLWKFIRRYDAAASPETCQLLA
CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
RLVDHAIVYYADFVRPAKTYRQPDARERAALSDLADSLRGLADGPSDPDTLQNLVFEIGK
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
RHGFEPLRTWFGCLYEVLLGQTEGPRFGIFIGLYGVAETVALIEAALLRPSVEAPAGGAG
HCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA